Job Description Q47129 Confidence 43.21% Date Thu Jan 5 12:36:13 GMT 2012 Rank 468 Aligned Residues 72 % Identity 13% Template c3nfiB_ PDB info PDB header:dna binding protein, transcription Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa49; PDBTitle: crystal structure of tandem winged helix domain of rna polymerase i2 subunit a49 Resolution 1.90 Å

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		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																							.	.	.
Query SS confidence																																							.	.	.
Query Sequence		E	A	A	L	Q	A	M	V	C	L	L	R	P	V	L	H	Q	R	E	S	V	Q	P	R	R	E	R	Q	F	Q	K	V	V	T	L	I	D	.	.	.	D	N	I	R	E	E	I	L	R	P	E	W	I	A	G	E	T	G	M	S	V	R	S	L	Y	R	M	F	A	D	K	G	L	V	V
Query Conservation																																							.	.	.
Alig confidence																																							.	.	.
Template Conservation
Template Sequence		E	I	L	V	D	G	I	L	S	R	F	T	V	I	K	P	S	K	D	R	S	Y	F	I	D	P	Q	N	E	D	K	I	L	C	Y	I	L	A	I	I	X	H	L	D	N	F	I	V	E	I	T	P	L	A	H	E	L	N	L	K	P	S	K	V	V	S	L	F	R	V	L	G	A	I	V
Template Known Secondary structure																						B																							T	T	T												T													T	T
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions