Job Description Q47129 Confidence 82.99% Date Thu Jan 5 12:36:13 GMT 2012 Rank 281 Aligned Residues 147 % Identity 13% Template c3iwzB_ PDB info PDB header:transcription Chain: B: PDB Molecule:catabolite activation-like protein; PDBTitle: the c-di-gmp responsive global regulator clp links cell-cell signaling2 to virulence gene expression in xanthomonas campestris Resolution 2.30 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.								.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																.	.	.										.	.	.	.	.	.	.
Query SS confidence																.	.	.										.	.	.	.	.	.	.
Query Sequence		Y	T	V	F	Q	L	S	G	Q	A	I	M	E	Q	.	.	.	D	E	R	Q	V	Q	I	G	A	.	.	.	.	.	.	.	G	D	I	T	L	L	D	A	S	R	P	C	S	L	Y	W	Q	E	S	S	K	Q	I	S	L	L	L	P	R	T	L	L	E	Q	Y	F	P	H	Q	K	P	I	C	A	E	R	L
Query Conservation																.	.	.										.	.	.	.	.	.	.
Alig confidence																.	.	.										.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	Y	Y	V	I	S	G	S	V	S	I	I	A	E	E	D	D	D	R	E	L	V	L	G	Y	F	G	S	G	E	F	V	G	E	M	G	L	F	I	E	S	D	T	R	E	V	I	L	R	T	R	T	Q	C	E	L	A	E	I	S	Y	E	R	L	Q	Q	L	F	Q	T	S	L	S	P	D	A	P	R	I
Template Known Secondary structure									S									T	T	S										T	T				S						S			S	B			S					S	S																		T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	D	L	P	M	V	Q	L	S	H	R	L	L	Q	E	S	M	N	N	P	A	L	S	E	T	E	S	E	A	A	L	Q	A	M	V	C	L	L	R	P	V	L	H	Q	R	E	S	V	Q	P	R	R	E	R	Q	F	Q	K	V	V	T	L	I	D	D	N	I	R	E	E	I	L	R	P	E	W	I	A	G
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	A	I	G	V	Q	L	S	K	R	L	L	D	T	T	R	K	A	S	R	L	A	F	L	D	V	T	D	R	I	V	R	T	L	H	D	L	S	K	E	P	E	A	M	S	H	P	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	L	R	V	S	R	Q	E	L	A	R
Template Known Secondary structure																										S														T	T	S	T	T				B	T	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.																			.	.	.	.	.	.	190	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	G	M	S	V	R	S	L	Y	R	M	F	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	G	C	S	R	E	M	A	G	R	V	L	K	K
Template Known Secondary structure				T	S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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