Job Description Q47129 Confidence 48.35% Date Thu Jan 5 12:36:13 GMT 2012 Rank 440 Aligned Residues 56 % Identity 21% Template c2vz4A_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator tipa; PDBTitle: the n-terminal domain of merr-like protein tipal bound to2 promoter dna Resolution 2.90 Å

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		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.											.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	R	P	E	W	I	A	G	E	T	G	M	S	V	R	S	L	Y	R	M	F	A	D	K	G	L	V	V	A	.	.	.	.	.	.	.	.	.	.	Q	Y	I	R	N	R	R	L	D	F	C	A	D	A	I	R	H	A	A	D	D	E	K	L	A	G	I	G	F
Query Conservation																																.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																																																										.	.	.
Template Sequence		S	Y	S	V	G	Q	V	A	G	F	A	G	V	T	V	R	T	L	H	H	Y	D	D	I	G	L	L	V	P	S	E	R	S	H	A	G	H	R	R	Y	S	D	A	D	L	D	R	L	Q	Q	I	L	F	Y	R	E	.	.	.	L	G	F	P	L	D	E	V	A	A
Template Known Secondary structure			B										T													T	S	S			S				S	S					B																	.	.	.	T	T
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions