Job Description Q47129 Confidence 74.61% Date Thu Jan 5 12:36:13 GMT 2012 Rank 312 Aligned Residues 144 % Identity 10% Template c2bgcA_ PDB info PDB header:transcription Chain: A: PDB Molecule:prfa; PDBTitle: prfa-g145s, a constitutive active mutant of the2 transcriptional regulator in l.monocytogenes Resolution 2.3 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.				90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																.	.	.					.	.	.										.	.	.	.	.
Query SS confidence																.	.	.					.	.	.										.	.	.	.	.
Query Sequence		Y	T	V	F	Q	L	S	G	Q	A	I	M	E	Q	.	.	.	D	E	R	Q	.	.	.	V	Q	I	G	A	G	D	I	T	.	.	.	.	.	L	L	D	A	S	R	P	C	S	L	Y	W	Q	E	S	S	K	Q	I	S	L	L	L	P	R	T	L	L	E	Q	Y	F	P	H	Q	K	P	I	C	A	E	R
Query Conservation																.	.	.					.	.	.										.	.	.	.	.
Alig confidence																.	.	.					.	.	.										.	.	.	.	.
Template Conservation
Template Sequence		Y	C	I	F	L	Y	D	G	I	T	K	L	T	S	I	S	E	N	G	T	I	M	N	L	Q	Y	Y	K	G	A	F	V	I	M	S	G	F	I	D	T	E	T	S	V	G	Y	Y	N	L	E	V	I	S	E	Q	A	T	A	Y	V	I	K	I	N	E	L	K	E	L	L	S	K	N	L	T	H	F	F	Y	V
Template Known Secondary structure									S									T	T	S										S	S					S	B		T	T	T			B	S									S	S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	A	D	L	P	M	V	Q	L	S	H	R	L	L	Q	E	S	M	N	N	P	A	L	S	E	T	E	S	E	A	A	L	Q	A	M	V	C	L	L	R	P	V	L	H	Q	R	E	S	V	Q	P	R	R	E	R	Q	F	Q	K	V	V	T	L	I	D	D	N	I	R	E	E	I	L	R	P	E	W	I	A
Query Conservation
Alig confidence																						.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	Q	T	L	Q	K	Q	V	S	Y	S	L	A	K	F	N	D	F	S	I	.	.	.	.	.	N	G	K	L	G	S	I	C	S	Q	L	L	I	L	T	Y	V	Y	G	K	E	T	P	D	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	I	T	L	D	N	L	T	M	Q	E	L	G
Template Known Secondary structure																					T	.	.	.	.	.	T																						T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S
Template Predicted Secondary structure																						.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.						.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.																	.	.	.	.	.	.	.	170	.	.	.	.	.
		221	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		G	E	T	G	M	S	V	R	S	.	L	Y	R	M	F	A	D
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		Y	S	S	G	I	A	H	S	S	A	V	S	R	I	I	S	K
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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