Job Description Q47129 Confidence 71.93% Date Thu Jan 5 12:36:13 GMT 2012 Rank 321 Aligned Residues 142 % Identity 11% Template c1zreB_ PDB info PDB header:gene regulation/dna Chain: B: PDB Molecule:catabolite gene activator; PDBTitle: 4 crystal structures of cap-dna with all base-pair2 substitutions at position 6, cap-[6g;17c]icap38 dna Resolution 2.80 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.							90	.	.	.	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																				.	.	.	.	.	.											.	.	.	.
Query SS confidence																				.	.	.	.	.	.											.	.	.	.
Query Sequence		Y	T	V	F	Q	L	S	G	Q	A	I	M	E	Q	D	E	R	Q	.	.	.	.	.	.	V	Q	I	G	A	G	D	I	T	L	.	.	.	.	L	D	A	S	R	P	C	S	L	Y	W	Q	E	S	S	K	Q	I	S	L	L	L	P	R	T	L	L	E	Q	Y	F	P	H	Q	K	P	I	C	A	E	R	L
Query Conservation																				.	.	.	.	.	.											.	.	.	.
Alig confidence																				.	.	.	.	.	.											.	.	.	.
Template Conservation
Template Sequence		T	L	Y	Y	I	V	K	G	S	V	A	V	L	I	K	D	E	E	G	K	E	M	I	L	S	Y	L	N	Q	G	D	F	I	G	E	L	G	L	F	E	E	G	Q	E	R	S	A	W	V	R	A	K	T	A	C	E	V	A	E	I	S	Y	K	K	F	R	Q	L	I	Q	V	N	P	D	I	L	M	R	L	S
Template Known Secondary structure									S									T	T											T	T				S		T	T	S	S	S	T	T		B			S					S	S																				T
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	D	L	P	M	V	Q	L	S	H	R	L	L	Q	E	S	M	N	N	P	A	L	S	E	T	E	S	E	A	A	L	Q	A	M	V	C	L	L	R	P	V	L	H	Q	R	E	S	V	Q	P	R	R	E	R	Q	F	Q	K	V	V	T	L	I	D	D	N	I	R	E	E	I	L	R	P	E	W	I	A	G
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	M	A	R	R	L	Q	V	T	S	E	K	V	G	N	L	A	F	L	D	.	.	.	.	.	.	.	.	.	V	T	G	R	I	A	Q	T	L	L	N	L	A	K	Q	P	D	A	M	T	H	P	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	I	K	I	T	R	Q	E	I	G	Q
Template Known Secondary structure																							.	.	.	.	.	.	.	.	.													T	T	S	T	T					T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.										.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.															.	.	.	.	.	.	.	170	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	G	M	S	V	R	S	L	Y	R	M	F	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	G	C	S	R	E	T	V	G	R	I	L	K	M
Template Known Secondary structure				T	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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