Job Description P36930 Confidence 94.55% Date Thu Jan 5 11:54:01 GMT 2012 Rank 235 Aligned Residues 140 % Identity 12% Template c3kv1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri Resolution 1.70 Å

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		84	.	.	.	.	.	90	.	.	.	.	.	.					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		A	P	K	N	R	I	A	Q	A	A	V	K	M	.	.	.	.	I	H	E	G	M	T	V	I	L	D	S	G	S	T	T	M	L	I	A	E	G	L	M	T	A	K	N	I	T	V	I	T	N	S	L	P	A	A	F	A	L	S	E	N	K	D	I	T	L	V	V	C	G	G	T	V	R	H	K	T	R	S	M
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		E	Q	R	K	Q	V	A	A	L	V	S	S	Y	L	N	N	N	L	Q	E	G	X	A	V	A	V	G	Q	G	Q	N	V	A	A	V	A	D	H	A	G	I	V	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	A	R	F	V	S	A	I	G	G	T	H	I	I	N	.	.	.
Template Known Secondary structure																					T	T								S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	B		B						.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.																		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		H	G	S	I	A	E	R	S	L	Q	D	I	N	A	D	L	M	F	V	G	A	D	G	I	D	A	V	N	G	I	T	T	F	N	.	E	G	Y	S	I	S	G	A	M	V	T	A	A	N	K	V	I	A	V	L	D	S	S	K	F	N	R	R	G	F	N	Q	V	L	P	I	E	K	I	D	I	I	I	T	D
Query Conservation																																				.
Alig confidence																																				.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	H	I	C	R	R	L	A	K	K	Y	G	G	S	S	E	T	L	Y	A	P	A	Y	V	N	D	P	S	L	R	S	A	F	X	E	H	A	T	I	K	E	T	L	S	Q	A	R	K	A	E	F	A	L	.	.	.	.	.	.	.	.	.	.	.	V	G	I	G	D	X	D	E	N	S	H	X	V	K	L
Template Known Secondary structure														T								S	B	S	B		S	S									T	S												T		S				.	.	.	.	.	.	.	.	.	.	.										T					T
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150												.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		239	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		D	A	V	S	E	V	D	K	.	L	A	L	Q	K	T	R	V
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		G	F	F	T	P	K	E	F	V	E	A	R	L	N	D	G	I
Template Known Secondary structure		T	S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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