Job Description P36930 Confidence 96.67% Date Thu Jan 5 11:54:01 GMT 2012 Rank 131 Aligned Residues 183 % Identity 16% Template c3ketA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex; PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		T	M	N	S	F	E	R	R	N	K	I	I	Q	L	V	N	E	Q	.	.	G	T	V	L	V	Q	D	L	A	G	V	F	A	A	S	E	A	T	I	R	A	D	L	R	F	L	E	Q	K	G	V	V	T	R	F	H	G	G	A	A	K	I	M	S	G	N	S	E	T	E	T	Q	E	V	G	F	K	E	R	F
Query Conservation																				.	.
Alig confidence																				.	.																															.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	K	R	L	S	L	Y	Y	R	I	F	K	R	F	N	T	D	G	I	E	K	A	S	S	K	Q	I	A	D	A	L	G	I	D	S	A	T	V	R	R	D	F	S	Y	F	G	E	L	G	.	.	R	R	G	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																			T	T														T	S											T	T				S	.	.	B	T	T	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		Q	L	A	S	A	P	K	N	R	I	A	Q	A	A	V	K	M	I	H	E	G	M	T	V	I	L	D	S	G	S	T	T	M	L	I	A	E	G	L	M	.	T	A	K	N	I	T	V	I	T	N	S	L	P	A	A	F	A	L	S	E	N	K	D	I	T	L	V	V	C	G	G	T	V	R	H	K	T	R	S
Query Conservation																																										.
Alig confidence		.																																								.										.	.	.	.	.	.	.											.	.	.
Template Conservation		.																																																		.	.	.	.	.	.	.											.	.	.
Template Sequence		.	Y	D	V	K	K	L	M	N	F	F	A	E	I	L	N	D	H	S	T	T	N	V	M	L	V	G	C	G	N	I	G	R	A	L	L	H	Y	R	F	H	D	R	N	K	M	Q	I	S	M	.	.	.	.	.	.	.	A	F	D	L	D	S	N	D	L	V	.	.	.	G	K	T	T	E	D	G	I	P	V
Template Known Secondary structure		.														T	T		S	S										S								T	S		G	G	G	T	S	S						.	.	.	.	.	.	.					T	T	S	T	T	T	.	.	.	T	S	B		T	T	S		B
Template Predicted Secondary structure		.																																																		.	.	.	.	.	.	.											.	.	.
Template SS confidence
			66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		M	H	G	S	I	A	E	R	S	L	Q	D	I	N	A	D	L	M	F	V	G	A	D	G	I	D	A	V	N	G	I	T	T	F	N	E	G	Y	S	I	S	G	A	M	V	T	A	A	N	K	V	I	A	V	L	D	S	S	K	F	N	R	R	G	F	N	Q	V	L	P	I	E
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	I	S	T	I	N	D	H	L	I	D	S	D	I	E	T	A	I	L	.	.	.	.	.	.	.	.	.	.	T	V	P	S	T	E	A	Q	E	V	A	D	I	L	V	K	A	G	I	K	G	I	L	S	F	S	P	V	H	L	T	L	P	K	D	I	I	V	Q	Y	V	D
Template Known Secondary structure				G	G	G					T	S	S	S								.	.	.	.	.	.	.	.	.	.		S		G	G	G											T	T								S	S	S						T	T	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.											.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions