Job Description P36930 Confidence 84.08% Date Thu Jan 5 11:54:01 GMT 2012 Rank 378 Aligned Residues 146 % Identity 15% Template c1iz1B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:lysr-type regulatory protein; PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator Resolution 2.50 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		R	R	N	K	I	I	Q	L	V	N	E	Q	G	T	V	L	V	Q	D	L	A	G	V	F	A	A	S	E	A	T	I	R	A	D	L	R	F	L	E	Q	K	.	.	.	G	V	V	T	R	F	H	G	G	A	A	K	I	M	S	G	N	S	E	T	E	T	Q	E	V	G	F	K	E	R	F	Q	L	A	S	A
Query Conservation																																											.	.	.
Alig confidence															.	.																											.	.	.													.	.	.	.	.
Template Conservation															.	.																																										.	.	.	.	.
Template Sequence		R	Q	L	K	Y	F	I	A	V	A	E	A	G	.	.	N	M	A	A	A	A	K	R	L	H	V	S	Q	P	P	I	T	R	Q	M	Q	A	L	E	A	D	L	G	V	V	L	L	E	R	S	H	R	G	I	E	L	.	.	.	.	.	T	A	A	G	H	A	F	L	E	D	A	R	R	I	L	E	L	A	G
Template Known Secondary structure															.	.	S									T	S																	T	S							S	S	S				.	.	.	.	.
Template Predicted Secondary structure															.	.																																										.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.							.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.
Query Sequence		P	K	N	R	I	A	Q	A	A	V	K	M	I	H	E	G	M	T	V	I	L	D	S	G	S	T	T	M	L	I	A	E	G	L	.	.	.	.	.	.	M	T	A	K	N	I	T	V	I	T	N	S	L	P	A	A	F	A	L	S	E	N	K	D	I	T	L	V	V	C	G	G	T	V	R	H	K	T	R	S
Query Conservation																																				.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.
Template Conservation
Template Sequence		R	S	G	D	R	S	R	A	A	A	R	G	D	V	G	E	L	S	V	A	Y	F	G	T	P	I	Y	R	S	L	P	L	L	L	R	A	F	L	T	S	T	P	T	A	T	V	S	L	T	H	M	T	K	D	E	Q	V	E	G	L	L	A	G	T	I	H	V	G	F	S	R	F	F	P	R	H	P	G	I	E
Template Known Secondary structure													T	S	S									S	G	G	G	G	T													S	T	T																				T	S		S					S						T	T
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		159	160
Predicted Secondary structure
Query SS confidence
Query Sequence		M	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		157	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions