Job Description P10408 Confidence 99.22% Date Thu Jan 5 11:32:13 GMT 2012 Rank 52 Aligned Residues 476 % Identity 14% Template c3tbkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rig-i helicase domain; PDBTitle: mouse rig-i atpase domain Resolution 2.14 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.						120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		F	G	M	R	H	F	D	V	Q	L	L	G	G	M	V	L	N	E	R	C	I	A	E	M	R	T	G	E	G	K	T	L	T	A	T	L	P	A	Y	L	N	.	.	.	.	.	A	L	T	G	K	G	V	H	V	V	T	V	N	D	Y	L	A	Q	R	D	A	E	N	N	R	P	L	F	E	F	L	G	L	T
Query Conservation																																											.	.	.	.	.
Alig confidence																																											.	.	.	.	.
Template Conservation
Template Sequence		L	K	P	R	N	Y	Q	L	E	L	A	L	P	A	K	K	G	K	N	T	I	I	C	A	P	T	G	C	G	K	T	F	V	S	L	L	I	C	E	H	H	L	K	K	F	P	C	G	Q	K	G	K	V	V	F	F	A	N	Q	I	P	V	Y	E	Q	Q	A	T	V	F	S	R	Y	F	E	R	L	G	Y	N
Template Known Secondary structure																	T	T									T	T	S																T			S	S										S	S																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	I	N	L	P	G	M	P	A	P	A	K	R	E	A	Y	A	.	.	A	D	I	T	Y	G	T	N	N	E	Y	G	F	D	Y	L	R	D	N	M	A	F	S	P	E	E	R	V	Q	R	K	L	H	Y	A	L	V	D	E	V	D	S	I	L	I	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.													.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		I	A	S	I	S	G	A	T	S	D	S	V	S	V	Q	H	I	I	E	D	N	D	I	I	I	L	T	P	Q	I	L	V	.	.	.	.	.	.	N	N	L	N	N	G	A	I	P	S	L	S	V	F	T	L	X	I	F	D	E	C	H	N	T	S	K	N	H	P	Y	N	Q	I	X	F	R	Y	L	D	H	K
Template Known Secondary structure							T	T	T	G	G	G	S										S											.	.	.	.	.	.					T	S	S	S			G	G	G		S					T	T	G	G	G		S	T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.							.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
							219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	A	R	T	P	L	I	I	S	G	P	A	E	D	S	S	E	M	Y	K	R	V	N	K	I	I	P	H	L	I	R	Q	E	K	E	D	S	E	T	F	Q	G	E	G	H	F	S	V	D	E	K	S	R	Q	V	N	L	T	E	R	G	L	V	L	I	E	E	L	L	V	K	E	G	I	M	D
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	E	S	R	D	P	L	P	Q	V	V	G	L	T	A	S	V	G	V	G	D	A	K	T	A	E	E	A	X	Q	H	I	C	K	L	C	A	A	L	D	A	S	V	I	A	T	V	R	D	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	L	E	Q	V	V	Y	K	P	Q	K
Template Known Secondary structure		T	S	S			S										S					T	T			S															T	T		S							S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.																	.	.	450	.	.	.	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	E	S	L	Y	S	P	A	N	I	M	L	M	H	H	V	T	A	A	L	R	A	H	A	L	F	T	R	D	V	D	Y	I	V	K	D	G	E	V	I	I	V	D	E	H	T	G	R	T	M	Q	G	R	R	W	S	D	G	L	H	Q	A	V	E	A	K	E	G	V	Q	I	Q	N	E	N	Q	T	L	A
Query Conservation
Alig confidence																																								.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		I	S	R	K	V	A	S	R	T	S	N	T	F	K	C	I	I	S	Q	L	X	K	E	T	E	K	L	A	K	D	V	S	E	E	L	G	K	L	.	.	.	.	.	.	F	Q	I	Q	N	R	E	F	G	T	Q	K	Y	E	Q	W	I	V	G	V	H	K	A	C	S	V	F	Q	X	A	D	K	E	E	E	S
Template Known Secondary structure										S																					T	S						G	G	.	.	.	.	.	.	G	G			S			S	S	S																T				S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.							.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.															.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	T	F	Q	N	Y	F	R	L	Y	E	K	L	A	G	M	T	G	T	A	D	T	E	A	F	E	F	S	S	I	Y	K	L	D	T	V	V	V	P	T	N	R	P	M	I	R	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	D	L	V	Y	M	T	E	A	E	K	I	Q	A	I	I
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	C	K	A	L	F	L	Y	T	S	H	L	R	K	Y	N	D	A	L	I	I	S	E	D	A	Q	X	T	D	A	L	N	Y	L	K	A	F	F	H	D	V	R	E	T	E	R	E	L	T	R	R	F	E	E	K	L	E	E	L	E	K	V	S	R	D	P	S	N	E	N	P	K	L	R	D	L	Y	L	V
Template Known Secondary structure																											S																													T	T											G	G	G
Template Predicted Secondary structure
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	I	K	E	R	T	A	K	G	Q	P	V	L	V	G	T	I	S	I	E	K	S	E	L	V	S	N	E	L	T	K	A	G	I	K	H	N	V	L	N	A	K	F	H	A	N	E	A	A	I	V	A	Q	A	G	Y	P	A	A	V	T	I	A	T	N	M	A	G	R	G	T	D	I	V	L	G	G	S	W
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Sequence		L	Q	E	E	Y	H	L	K	P	E	T	K	T	I	L	F	V	K	T	R	A	L	V	D	A	L	K	K	W	I	E	E	N	P	A	L	S	F	L	K	P	G	I	L	T	G	.	.	.	.	.	.	.	.	.	.	.	D	N	N	I	L	I	A	T	S	V	A	D	E	G	I	D	I	A	E	.	.	.	.
Template Known Secondary structure										T	T								S	S															G	G	G	T	T									.	.	.	.	.	.	.	.	.	.	.			S								T	T					T	T	S	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template SS confidence
		619	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.												.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	E	V	A	A	L	E	N	P	T	A	E	Q	I	E	K	I	K	A	D	W	Q	V	R	H	D	A	V	L	E	A	G	G	L	H	I	I	G	T	E	R	H	E	S	R	R	I	D	N	Q	L	R	G	R	S	G	R	Q	G	D	A	G	S	S	R	F	Y	L	S	M	E	D	A	L	M	R	I	F	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	N	L	V	I	L	Y	E	Y	V	G	N	V	I	K	X	I	Q	T	R	G	R	G	R	A	.	.	.	R	D	S	K	C	F	L	L	T	S	S	A	D	V	I	E	K	E	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S						S			S	S							S	S				T	T	.	.	.	T	S								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template SS confidence
																																			710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.				.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	R	V	S	G	M	M	R	K	L	G	M	K	P	G	E	A	I	E	H	P	W	V	T	K	A	I	A	N	A	Q	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	X	I	K	E	K	I	X	N	E	S	I	L	R	L	Q	T	W	D	E	X	K	F	G	K	T	V	H	R	I	Q	V	N
Template Known Secondary structure																				S
Template Predicted Secondary structure
Template SS confidence
		754	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.