Job Description P10408 Confidence 89.37% Date Thu Jan 5 11:32:13 GMT 2012 Rank 156 Aligned Residues 179 % Identity 18% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.					.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.
Predicted Secondary structure																							.	.	.	.															.	.																																.	.
Query SS confidence																							.	.	.	.															.	.																																.	.
Query Sequence		M	L	I	K	L	L	T	K	V	F	G	S	R	N	D	R	T	L	R	R	M	.	.	.	.	R	K	V	V	N	I	I	N	A	M	E	P	E	M	.	.	E	K	L	S	D	E	E	L	K	G	K	T	A	E	F	R	A	R	L	E	K	G	E	V	L	E	N	L	I	P	E	.	.	A	F	A	V	V	R
Query Conservation																							.	.	.	.															.	.																																.	.
Alig confidence																							.	.	.	.															.	.																																.	.
Template Conservation
Template Sequence		M	V	L	D	N	L	G	K	A	L	A	N	T	L	K	K	I	A	R	A	S	S	V	D	E	A	L	I	K	E	L	V	R	D	I	Q	R	A	L	I	Q	A	D	V	N	V	R	L	V	L	Q	L	T	R	E	I	Q	R	R	A	L	E	E	K	P	P	A	G	I	S	K	K	E	H	I	I	K	I	V	Y
Template Known Secondary structure				S	T																	S																					T	T																								T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		E	A	S	K	R	V	F	G	M	R	H	F	D	V	Q	L	L	G	G	M	V	L	N	E	R	C	I	A	E	M	.	.	.	.	R	T	G	E	G	K	T	L	T	A	T	L	P	A	Y	L	N	A	L	T	G	K	G	V	H	V	V	T	V	N	D	Y	L	A	Q	R	D	A	E	N	N	R	P	L	F	E
Query Conservation																																.	.	.	.
Alig confidence																		.	.	.	.	.	.	.								.	.	.	.																																				.
Template Conservation																		.	.	.	.	.	.	.																																															.
Template Sequence		E	E	L	T	K	F	L	G	T	E	A	K	P	I	E	I	.	.	.	.	.	.	.	K	E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	.	A	Y	H	Q	L	R	Q	L	L	D
Template Known Secondary structure								T	T	S	S							.	.	.	.	.	.	.		S	S	S									T	T	S	S														T	T	T											S	S	T		.										G
Template Predicted Secondary structure																		.	.	.	.	.	.	.																																															.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	G	L	T	V	G	I	N	L	P	G	M	P	A	P	A	K	R	E	A	Y	A	A	D	I	T	Y	G	T	N	N	E	Y	G	F	D	Y	L	R	D	N	M	A	F	S	P	E	E	R	V	Q	R	K	L	H	Y	A	L	V	D	E	V
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	D	Y	F	K	.	.	.	.	.	.	.	.	.	.	.	S	K	G	V	D	I	I	I	V	D	T	A
Template Known Secondary structure		G	G	T							T	T											.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.		T	T		S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.														.	.	.	.	.	.												180	.	.	.	.	.	.	.	.	.	190	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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