Job Description P10408 Confidence 100.00% Date Thu Jan 5 11:32:13 GMT 2012 Rank 5 Aligned Residues 765 % Identity 51% Template c3dinB_ PDB info PDB header:membrane protein, protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase Resolution 4.50 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	G	S	R	N	D	R	T	L	R	R	M	R	K	V	V	N	I	I	N	A	M	E	P	E	M	E	K	L	S	D	E	E	L	K	G	K	T	A	E	F	R	A	R	L	E	K	G	E	V	L	E	N	L	I	P	E	A	F	A	V	V	R	E	A	S	K	R	V	F	G	M	R	H	F	D	V	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	F	D	K	N	K	R	I	L	K	K	Y	A	K	M	V	S	K	I	N	Q	I	E	S	D	L	R	S	K	K	N	S	E	L	I	R	L	S	M	V	L	K	E	K	V	N	S	F	E	D	A	D	E	H	L	F	E	A	F	A	L	V	R	E	A	A	R	R	T	L	G	M	R	P	F	D	V	Q	V
Template Known Secondary structure			S																								T	T	T	T	T		S												T	T		S	S		S																											S	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		L	G	G	M	V	L	N	E	R	C	I	A	E	M	R	T	G	E	G	K	T	L	T	A	T	L	P	A	Y	L	N	A	L	T	G	K	G	V	H	V	V	T	V	N	D	Y	L	A	Q	R	D	A	E	N	N	R	P	L	F	E	F	L	G	L	T	V	G	I	N	L	P	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																																																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	G	G	I	A	L	H	E	G	K	V	A	E	M	K	T	G	E	G	K	T	L	A	A	T	M	P	I	Y	L	N	A	L	I	G	K	G	V	H	L	V	T	V	N	D	Y	L	A	R	R	D	A	L	W	M	G	P	V	Y	L	F	L	G	L	R	V	G	V	I	N	S	L	G	K	S	Y	E	V	V	W
Template Known Secondary structure										S	S					S	S	S	S															T	T	S	S							S												T							T	T								S	S							S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
																																											160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	P	A	P	A	K	R	E	A	Y	A	A	D	I	T	Y	G	T	N	N	E	Y	G	F	D	Y	L	R	D	N	M	A	F	S	P	E	E	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	N	P	D	L	A	R	K	A	I	E	E	N	W	S	V	W	P	D	G	F	N	G	E	V	L	K	E	E	S	M	N	K	E	A	V	E	A	F	Q	V	E	L	K	E	I	T	R	K	E	A	Y	L	C	D	V	T	Y	G	T	N	N	E	F	G	F	D	Y	L	R	D	N	L	V	L	D	Y	N	D	K
Template Known Secondary structure		T	T	T	T															S	S		S	S	S				S										G	G	G														S	S																S	S	S		S		T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	R	K	L	H	Y	A	L	V	D	E	V	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	P	A	E	D	S	S	E	M	Y	K	R	V	N	K	I	I	P	H	L	I	R	Q	E	K	E	D	S	E	T	F	Q	G	E	G	H	F	S	V	D	E	K	S	R	Q	V	N	L	T	E	R	G
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Q	R	G	H	F	Y	A	I	V	D	E	A	D	S	V	L	I	D	E	A	R	T	P	L	I	I	S	G	P	S	K	E	S	P	S	V	Y	R	R	F	A	Q	I	A	K	K	F	V	K	.	.	.	.	.	.	.	.	.	.	.	D	K	D	F	T	V	D	E	K	A	R	T	I	I	L	T	E	E	G
Template Known Secondary structure			S	S									T					T	T			S											T	T																	T	.	.	.	.	.	.	.	.	.	.	.	S		S		S				S	S	S					S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.												.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	L	I	E	E	L	L	V	K	E	G	I	M	D	E	G	E	S	L	Y	S	P	A	N	I	M	L	M	H	H	V	T	A	A	L	R	A	H	A	L	F	T	R	D	V	D	Y	I	V	K	D	G	E	V	I	I	V	D	E	H	T	G	R	T	M	Q	G	R	R	W	S	D	G	L	H	Q	A	V	E
Query Conservation
Alig confidence												.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.
Template Sequence		V	A	K	A	E	K	I	I	G	V	.	.	.	.	.	.	.	E	N	L	Y	D	P	G	N	V	S	L	L	Y	H	L	I	N	A	L	K	A	L	H	L	F	K	K	D	V	D	Y	V	V	M	N	G	E	V	I	I	V	D	E	F	T	G	R	L	L	P	G	R	R	Y	S	G	G	L	H	Q	A	I	E
Template Known Secondary structure								S	S			.	.	.	.	.	.	.		S				T	T	T																	S		T	T	T	S		B		T	T	T			B		B			T	T		S		B		S			S	S	S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320								.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	E	G	V	Q	I	Q	N	E	N	Q	T	L	A	S	I	T	F	Q	N	Y	F	R	L	Y	E	K	L	A	G	M	T	G	T	A	D	T	E	A	F	E	F	S	S	I	Y	K	L	D	T	V	V	V	P	T	N	R	P	M	I	R	K	D	L	P	D	L	V	Y	M	T	E	A	E	K	I	Q	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	E	G	V	P	I	K	E	E	S	I	T	Y	A	T	I	T	F	Q	N	Y	F	R	M	Y	E	K	L	A	G	M	T	G	T	A	K	T	E	E	S	E	F	V	Q	V	Y	G	M	E	V	V	V	I	P	T	H	K	P	M	I	R	K	D	H	D	D	L	V	F	R	T	Q	K	E	K	Y	E	K	I
Template Known Secondary structure				S	S														T	T	T	T	T	G	G	G	S	S						S			S										T	S										S	S	T	T		S										S	S	T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	D	I	K	E	R	T	A	K	G	Q	P	V	L	V	G	T	I	S	I	E	K	S	E	L	V	S	N	E	L	T	K	A	G	I	K	H	N	V	L	N	A	K	F	H	A	N	E	A	A	I	V	A	Q	A	G	Y	P	A	A	V	T	I	A	T	N	M	A	G	R	G	T	D	I	V	L	G	G	S
Query Conservation
Alig confidence																																																																																.	.
Template Conservation																																																																																.	.
Template Sequence		V	E	E	I	E	K	R	Y	K	K	G	Q	P	V	L	V	G	T	T	S	I	E	K	S	E	L	L	S	S	M	L	K	K	K	G	I	P	H	Q	V	L	N	A	K	Y	H	E	K	E	A	E	I	V	A	K	A	G	Q	K	G	M	V	T	I	A	T	N	M	A	G	R	G	T	D	I	K	L	G	.	.
Template Known Secondary structure											T	T								S	S														T								S	S	S												S	S	S	S	S							G	G	G	S	S	S							.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Q	A	E	V	A	A	L	E	N	P	T	A	E	Q	I	E	K	I	K	A	D	W	Q	V	R	H	D	A	V	L	E	A	G	G	L	H	I	I	G	T	E	R	H	E	S	R	R	I	D	N	Q	L	R	G	R	S	G	R	Q	G	D	A	G	S	S	R	F	Y	L	S	M	E	D	A	L	M	R	I	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	V	A	E	L	G	G	L	C	I	I	G	T	E	R	H	E	S	R	R	I	D	N	Q	L	R	G	R	A	G	R	Q	G	D	P	G	E	S	I	F	F	L	S	L	E	D	D	L	L	R	I	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	G	G	G	S	S	S						S	S			S	S										T	S			T	T											T	T	S	S	T	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																													542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
		599	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	D	R	V	S	G	M	M	R	K	L	G	M	K	P	G	E	A	I	E	H	P	W	V	T	K	A	I	A	N	A	Q	R	K	V	E	S	R	N	F	D	I	R	K	Q	L	L	E	Y	D	D	V	A	N	D	Q	R	R	A	I	Y	S	Q	R	N	E	L	L	D	V	S	D	V	S	E	T	I	N	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	E	Q	I	G	K	V	M	N	I	L	K	I	E	E	G	Q	P	I	Q	H	P	M	L	S	K	L	I	E	N	I	Q	K	K	V	E	G	I	N	F	S	I	R	K	T	L	M	E	M	D	D	V	L	D	K	Q	R	R	A	V	Y	S	L	R	D	Q	I	L	L	E	K	D	Y	D	E	Y	L	K	D
Template Known Secondary structure		S										T	T				S		S		B		S	S	S
Template Predicted Secondary structure
Template SS confidence
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.
		679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	E	D	V	F	K	A	T	I	D	A	Y	I	P	P	Q	S	L	E	E	M	W	D	I	P	G	L	Q	E	R	L	K	N	D	F	D	L	D	L	P	I	A	E	W	L	D	K	E	P	E	L	H	E	E	T	L	R	E	R	I	L	A	Q	S	I	E	V	Y	Q	R	K	E	E	V	V	G	A	E	M
Query Conservation
Alig confidence																	.	.	.	.																									.	.	.	.																																	.
Template Conservation																	.	.	.	.																									.	.	.	.																																	.
Template Sequence		I	F	E	D	V	V	S	T	R	V	E	E	F	C	S	.	.	.	.	G	K	N	W	D	I	E	S	L	K	N	S	L	S	F	F	P	A	G	L	F	D	L	D	.	.	.	.	E	K	Q	F	S	S	S	E	E	L	H	D	Y	L	F	N	R	L	W	E	E	Y	Q	R	K	K	Q	E	I	G	E	D	.
Template Known Secondary structure											T	T	T	S	S		.	.	.	.	S	S	S											T			S	S		S	S	T	T		.	.	.	.							S	S																			G	G	G		G	G	.
Template Predicted Secondary structure																	.	.	.	.																									.	.	.	.																																	.
Template SS confidence
		675	.	.	.	.	680	.	.	.	.	.	.	.	.	.					690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.					.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
		759	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	H	F	E	K	G	V	M	L	Q	T	L	D	S	L	W	K	E	H	L	A	A	M	D	Y	L	R	Q	G	I	H	L	R	G	Y	A	Q	K	D	P	K	Q	E	Y	K	R	E	S	F	S	M	F	A	A	M	L	E	S	L	K	Y	E	V	I	S	T	L	S	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	K	V	I	R	F	L	M	L	R	I	I	D	D	H	W	R	R	Y	L	E	E	V	E	H	V	K	E	A	V	Q	L	R	S	Y	G	Q	K	D	P	I	V	E	F	K	K	E	T	Y	Y	M	F	D	E	M	M	R	R	I	N	D	T	I	A	N	Y	V	L	R	V
Template Known Secondary structure		G																														T	T	T	T	T	S	S	S			S	S																										T	T
Template Predicted Secondary structure
Template SS confidence
		746	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.