Job Description P10408 Confidence 93.17% Date Thu Jan 5 11:32:13 GMT 2012 Rank 150 Aligned Residues 194 % Identity 22% Template c2j7pA_ PDB info PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy Resolution 1.97 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.																														.	.
Query SS confidence																																						.																														.	.
Query Sequence		L	I	K	L	L	T	K	V	F	G	S	R	N	D	R	T	L	R	R	M	R	K	V	V	N	I	I	N	A	M	E	P	E	M	E	K	.	L	S	D	E	E	L	K	G	K	T	A	E	F	R	A	R	L	E	K	G	E	V	L	E	N	L	I	P	E	.	.	A	F	A	V	V	R	E	A	S	K	R	V
Query Conservation																																						.																														.	.
Alig confidence																		.												.	.							.																														.	.
Template Conservation																		.												.	.
Template Sequence		L	Q	E	A	I	G	R	L	R	G	R	G	R	I	T	E	.	E	D	L	K	A	T	L	R	E	I	R	.	.	R	A	L	M	D	A	D	V	N	L	E	V	A	R	D	F	V	E	R	V	R	E	E	A	L	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y	E	A	L	K	E	A
Template Known Secondary structure								T	T	T	T	S		S				.												.	.						T	T																				T	T	T	T	T		S
Template Predicted Secondary structure																		.												.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		F	G	M	R	H	F	D	V	Q	L	L	G	G	M	V	L	N	E	R	C	I	A	E	M	.	.	.	.	R	T	G	E	G	K	T	L	T	A	T	L	P	A	Y	L	N	A	L	T	G	K	G	V	H	V	V	T	V	N	D	Y	L	A	Q	R	D	A	E	N	N	R	P	L	F	E	F	L	G	L	T	V
Query Conservation																										.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.											.	.	.	.																																				.
Template Conservation								.	.	.	.	.	.	.	.																																																		.
Template Sequence		L	G	G	E	A	R	.	.	.	.	.	.	.	.	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	.	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V
Template Known Secondary structure		T	T	S	S			.	.	.	.	.	.	.	.						S	S								S	T	T	S	S														T	T	T											S	S	T	T	.													T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.																																																		.
Template SS confidence
		86	.	.	.	90	.									.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	N	L	P	G	M	P	A	P	A	K	R	E	A	Y	A	A	D	I	T	Y	G	T	N	N	E	Y	G	F	D	Y	L	R	D	N	M	A	F	S	P	E	E	R	V	Q	R	K	L	H	Y	A	L	V	D	E	V	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	P	A	E	D	S	S	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		L	E	V	M	D	G	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	S	I	R	R	R	V	E	E	K	A	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	R	D	L	I	L	V	D	T	A	.	.	.	.	.	.	.	G	R	L	Q	I	D	E	P
Template Known Secondary structure						T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T										.	.	.	.	.	.	.				T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.																	.	.	.	.	.	170	.	.	.	.	.	.	.	.																	.	180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Y	K	R	V	N	K	I	I	P	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	M	G	E	L	A	R	L	K	E	V	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions