Job Description P10408 Confidence 80.63% Date Thu Jan 5 11:32:13 GMT 2012 Rank 179 Aligned Residues 172 % Identity 26% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure														.	.																									.																														.	.
Query SS confidence														.	.																									.																														.	.
Query Sequence		L	I	K	L	L	T	K	V	F	G	S	R	.	.	N	D	R	T	L	R	R	M	R	K	V	V	N	I	I	N	A	M	E	P	E	M	E	K	.	L	S	D	E	E	L	K	G	K	T	A	E	F	R	A	R	L	E	K	G	E	V	L	E	N	L	I	P	E	.	.	A	F	A	V	V	R	E	A	S	K
Query Conservation														.	.																									.																														.	.
Alig confidence														.	.																	.	.	.	.	.				.																														.	.
Template Conservation																																.	.	.	.	.
Template Sequence		L	Q	E	A	I	G	R	L	R	G	R	G	R	I	T	E	E	D	L	K	A	T	L	R	E	I	R	R	A	L	.	.	.	.	.	M	D	A	D	V	N	L	E	V	A	R	D	F	V	E	R	V	R	E	E	A	L	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y	E	A	L	K
Template Known Secondary structure									T	T	T	S		S																		.	.	.	.	.		T	T	T																				T	T	T	T	T		S
Template Predicted Secondary structure																																.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																												.	.	.	.
Query SS confidence																												.	.	.	.
Query Sequence		R	V	F	G	M	R	H	F	D	V	Q	L	L	G	G	M	V	L	N	E	R	C	I	A	E	M	.	.	.	.	R	T	G	E	G	K	T	L	T	A	T	L	P	A	Y	L	N	A	L	T	G	K	G	V	H	V	V	T	V	N	D	Y	L	A	Q	R	D	A	E	N	N	R	P	L	F	E	F	L	G	L
Query Conservation																												.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.										.	.	.	.																																				.
Template Conservation											.	.	.	.	.	.	.	.																																																	.
Template Sequence		E	A	L	G	G	E	A	R	L	.	.	.	.	.	.	.	.	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	.	A	R	E	Q	L	R	L	L	G	E	K	V	G	V
Template Known Secondary structure				T	T	S	S				.	.	.	.	.	.	.	.					S	S									T	T	S	S															T	T										S	S				.													T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.																																																	.
Template SS confidence
		84	.	.	.	.	.	90	.	.									.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	G	I	N	L	P	G	M	P	A	P	A	K	R	E	A	Y	A	A	D	I	T	Y	G	T	N	N	E	Y	G	F	D	Y	L	R	D	N	M	A	F	S	P	E	E	R	V	Q	R	K	L	H	Y	A	L	V	D	E	V
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	E	K	A	R	L	E	.	.	.	.	.	.	.	.	.	.	.	A	R	D	L	I	L	V	D	T	A
Template Known Secondary structure								T	T										.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	T		S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.														.	.	.	.	.	.	.	.												180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions