Job Description P10408 Confidence 31.92% Date Thu Jan 5 11:32:13 GMT 2012 Rank 299 Aligned Residues 319 % Identity 15% Template c2is6B_ PDB info PDB header:hydrolase/dna Chain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex Resolution 2.20 Å

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		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.									.	.	.	.
Query SS confidence																						.	.	.	.									.	.	.	.
Query Sequence		G	E	G	K	T	L	T	A	T	L	P	A	Y	L	N	A	L	T	G	K	.	.	.	.	G	V	H	V	V	T	V	N	.	.	.	.	D	Y	L	A	Q	R	D	A	E	N	N	R	P	L	F	E	F	L	G	L	T	V	G	I	N	L	P	G	M	P	A	P	A	K	R	E	A	Y	A	A	D	I	T	Y
Query Conservation																						.	.	.	.									.	.	.	.
Alig confidence																						.	.	.	.									.	.	.	.							.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	G	K	T	R	V	L	V	H	R	I	A	W	L	M	S	V	E	N	C	S	P	Y	S	I	M	A	V	T	F	T	N	K	A	A	A	E	M	R	H	R	.	.	.	.	.	.	.	I	G	Q	L	M	G	T	S	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	W	V
Template Known Secondary structure		T	S	S															T	S				G	G	G						S	S											.	.	.	.	.	.	.						T	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.								.	.	.	.	.	.	80	.	.	.																		.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	N	N	E	Y	G	F	D	Y	L	R	D	N	M	A	F	S	P	E	E	R	V	Q	R	K	L	H	Y	A	L	V	D	E	V	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	P	A	E	D	S	S	E	M	Y	K	R	V	N	K	I	I	P	H	L	I	R	Q	E	K	E	D	S	E	T
Query Conservation
Alig confidence																.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	F	H	G	L	A	H	R	L	L	R	A	H	.	.	.	.	.	H	M	D	A	N	L	P	Q	D	F	Q	I	L	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	Q	L	R	L	L	K	R	L	I	K	A	M	N	L	D	E	K	Q	W	P	P	R
Template Known Secondary structure															T	.	.	.	.	.					T			T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T			T	T	T	S
Template Predicted Secondary structure																.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																							.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																																	.	.																													.	.	.
Query SS confidence																																																	.	.																													.	.	.
Query Sequence		F	Q	G	E	G	H	F	S	V	D	E	K	S	R	Q	V	N	L	T	E	R	G	L	V	L	I	E	E	L	L	V	K	E	G	I	M	D	E	G	E	S	L	Y	S	P	A	N	.	.	I	M	L	M	H	H	V	T	A	A	L	R	A	H	A	L	F	T	R	D	V	D	Y	I	V	K	D	G	.	.	.
Query Conservation																																																	.	.																													.	.	.
Alig confidence																																																	.	.																													.	.	.
Template Conservation
Template Sequence		Q	A	M	W	Y	I	N	S	Q	K	D	E	G	L	R	P	H	H	I	N	P	V	E	Q	T	W	Q	K	V	Y	Q	A	Y	Q	E	A	C	D	R	A	G	L	V	D	F	A	E	L	L	L	R	A	H	E	L	W	L	N	K	P	H	I	L	Q	H	Y	R	E	R	F	T	N	I	L	V	D	E	F	Q	D
Template Known Secondary structure													T	T			S																									T																																			S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
																				332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	I	I	V	D	E	H	T	G	R	T	M	Q	G	R	R	W	S	D	G	L	H	Q	A	V	E	A	K	E	G	V	Q	I	Q	N	E	N	Q	T	L	A	S	I	T	F	Q	N	Y	F	R	L	Y	E	K	L	A	G	M	T	G	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	N	I	Q	Y	A	W	I	R	L	L	A	G	D	T	G	K	V	M	I	V	G	D	D	D	Q	S	I	Y	G	W	R	G	A	Q	V	E	N	I	Q	R	F	L	N	D	F	P	G	A	E	T	I	R	L	E	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	S	T	S	N
Template Known Secondary structure															T	T	T									G	G	G				G	G	G	T			T										S	T	T								B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																	.	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.				450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		A	D	T	E	A	F	E	F	S	S	I	Y	K	L	D	T	V	V	V	P	T	N	R	P	M	I	R	K	D	L	P	D	L	V	Y	M	T	E	A	E	K	I	Q	A	I	I	E	D	I	K	E	R	T	A	K	G	.	.	.	Q	P	V	L	V	G	T	I	S	I	E	K	S	E	L	V	S	N	E	L	T
Query Conservation																																																										.	.	.
Alig confidence																																																										.	.	.
Template Conservation
Template Sequence		I	L	S	A	A	N	A	L	I	E	N	N	N	G	R	L	G	K	K	L	W	T	D	G	A	D	G	E	P	I	S	L	Y	C	A	F	N	E	L	D	E	A	R	F	V	V	N	R	I	K	T	W	Q	D	N	G	G	A	L	A	E	C	A	I	L	Y	R	S	N	A	Q	S	R	V	L	E	E	A	L	L
Template Known Secondary structure											T	T	S	T	T							B		S	S				S								S	S																		T	T			G	G	G						S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	G	I	K	H	N	V	L	N	A	K	F	H	A	N	E	A	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	S	M	P	Y	R	I	Y	G	G	M	R	F	F	E	R	Q	E	I
Template Known Secondary structure			T	T							S	S	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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