Job Description P10408 Confidence 100.00% Date Thu Jan 5 11:32:13 GMT 2012 Rank 1 Aligned Residues 815 % Identity 55% Template c2ipcB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer Resolution 2.80 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	V	F	G	S	R	N	D	R	T	L	R	R	M	R	K	V	V	N	I	I	N	A	M	E	P	E	M	E	K	L	S	D	E	E	L	K	G	K	T	A	E	F	R	A	R	L	E	K	G	E	V	L	E	N	L	I	P	E	A	F	A	V	V	R	E	A	S	K	R	V	F	G	M	R	H	F	D	V
Query Conservation
Alig confidence																																				.	.
Template Conservation																																				.	.
Template Sequence		R	R	L	F	D	N	N	E	R	E	I	A	R	Y	Y	K	Q	V	V	E	P	V	N	R	L	E	A	E	V	E	K	L	P	D	.	.	L	A	A	A	Y	R	E	L	K	E	K	H	E	K	G	A	S	L	D	E	L	L	P	M	A	F	A	L	T	R	E	S	A	K	R	Y	L	G	M	R	H	F	D	V
Template Known Secondary structure			T	T	T	S													T							T						T		S		.	.														T	T			T	T	T	T																T
Template Predicted Secondary structure																																				.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	G	G	M	V	L	N	E	R	C	I	A	E	M	R	T	G	E	G	K	T	L	T	A	T	L	P	A	Y	L	N	A	L	T	G	K	G	V	H	V	V	T	V	N	D	Y	L	A	Q	R	D	A	E	N	N	R	P	L	F	E	F	L	G	L	T	V	G	I	N	L	P	G	M	P	A	P	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	I	G	G	A	V	L	H	E	G	K	I	A	E	M	K	T	G	E	G	K	T	L	V	A	T	L	A	V	A	L	N	A	L	T	G	K	G	V	H	V	V	T	V	N	D	Y	L	A	R	R	D	A	E	W	M	G	P	V	Y	R	G	L	G	L	S	V	G	V	I	Q	H	A	S	T	P	A	E	R
Template Known Secondary structure											T	T	S						S	T																T	T		S							S	S																	T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		R	E	A	Y	A	A	D	I	T	Y	G	T	N	N	E	Y	G	F	D	Y	L	R	D	N	M	A	F	S	P	E	E	R	V	Q	R	.	.	.	K	L	H	Y	A	L	V	D	E	V	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	P	A	E	D	S	S	E	M	Y	K	R	V	N	K	I	I
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.
Template Conservation
Template Sequence		R	K	A	Y	L	A	D	V	T	Y	V	T	N	S	E	L	G	F	D	Y	L	R	D	N	M	A	I	S	P	D	Q	L	V	L	R	H	D	H	P	L	H	Y	A	I	I	D	E	V	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	P	A	E	K	A	T	D	L	Y	Y	K	M	A	E	I	A
Template Known Secondary structure						T	S	S																	T	T		S	S	T	T	T			S		S	S	S	S	S						T	T					T	T	S	S	T	T	S							S		S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		244	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		P	H	L	I	R	Q	.	E	K	E	D	S	E	T	F	Q	G	E	G	H	F	S	V	D	E	K	S	R	Q	V	N	L	T	E	R	G	L	V	L	I	E	E	L	L	V	K	E	G	I	M	D	E	G	E	S	L	Y	S	P	A	N	I	M	L	M	H	H	V	T	A	A	L	R	A	H	A	L	F	T	R
Query Conservation								.
Alig confidence								.																																								.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.
Template Sequence		K	K	L	E	R	G	L	P	A	E	P	G	V	R	K	E	P	T	G	D	Y	T	V	E	E	K	N	R	S	V	H	L	T	L	Q	G	I	A	K	A	E	K	L	L	G	I	.	.	.	.	.	.	.	E	G	L	F	S	P	E	N	M	E	L	A	H	M	L	I	Q	A	I	R	A	K	E	L	Y	H	R
Template Known Secondary structure				S								S	S	S				S	S						T	T	S																			S		.	.	.	.	.	.	.					T	T	T																		S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.								290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	D	Y	I	V	K	D	G	E	V	I	I	V	D	E	H	T	G	R	T	M	Q	G	R	R	W	S	D	G	L	H	Q	A	V	E	A	K	E	G	V	Q	I	Q	N	E	N	Q	T	L	A	S	I	T	F	Q	N	Y	F	R	L	Y	E	K	L	A	G	M	T	G	T	A	D	T	E	A	F	E	F	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	D	Y	I	V	Q	D	G	Q	V	I	I	V	D	E	F	T	G	R	L	M	P	G	R	R	Y	G	E	G	L	H	Q	A	I	E	A	K	E	G	V	R	I	E	R	E	N	Q	T	L	A	T	I	T	Y	Q	N	F	F	R	L	Y	E	K	R	A	G	M	T	G	T	A	K	T	E	E	K	E	F	Q
Template Known Secondary structure									S	S							T	T	T	T				T	T				G	G	G									T	T						S														T	T	S	S							S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	Y	K	L	D	T	V	V	V	P	T	N	R	P	M	I	R	K	D	L	P	D	L	V	Y	M	T	E	A	E	K	I	Q	A	I	I	E	D	I	K	E	R	T	A	K	G	Q	P	V	L	V	G	T	I	S	I	E	K	S	E	L	V	S	N	E	L	T	K	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	Y	G	M	D	V	V	V	V	P	T	N	R	P	V	I	R	K	D	F	P	D	V	V	Y	R	T	E	K	G	K	F	Y	A	V	V	E	E	I	A	E	K	Y	E	R	G	Q	P	V	L	V	G	T	I	S	I	E	K	S	E	R	L	S	Q	M	L	K	E	P	R	L	Y	L	P	R	L	E	M	R
Template Known Secondary structure														S	S													S	S																			T								S	S													S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
																																																																			472	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	I	K	H	N	V	L	N	A	K	F	H	A	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	L	F	K	K	A	S	Q	K	Q	Q	G	P	E	W	E	R	L	R	K	L	L	E	R	P	A	Q	L	K	D	E	D	L	A	P	F	E	G	L	I	P	P	K	G	N	L	R	T	A	W	E	G	L	K	R	A	V	H	T	L	A	V	L	R	Q	G	I	P	H	Q	V	L	N	A	K	H	H	A	R
Template Known Secondary structure										T	T			S										T	S	S	S	T	T		S					S	G	G	G	G	G			S	S																						T									S	S	S
Template Predicted Secondary structure
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.																																						.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	A	I	V	A	Q	A	G	Y	P	A	A	V	T	I	A	T	N	M	A	G	R	G	T	D	I	V	L	G	G	S	W	Q	A	E	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	E	N	P
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	E	I	V	A	Q	A	G	R	S	K	T	V	T	I	A	T	N	M	A	G	R	G	T	D	I	K	L	G	G	N	P	E	Y	L	A	A	A	L	L	E	K	E	G	F	D	R	Y	E	W	K	V	E	L	F	I	K	K	M	V	A	G	K	E	E	E	A	R	A	L	A	Q	E	L	G	I	R	E	E
Template Known Secondary structure								T	T	T	S	T	T							S	S	T	T	T	T					S	S								T	T	T	T	S	S	S		S	T	T	T														T												T	T
Template Predicted Secondary structure
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	E	Q	I	E	K	I	K	A	D	W	Q	V	R	H	D	A	V	L	E	A	G	G	L	H	I	I	G	T	E	R	H	E	S	R	R	I	D	N	Q	L	R	G	R	S	G	R	Q	G	D	A	G	S	S	R	F	Y	L	S	M	E	D	A	L	M	R	I	F	A	S	D	R	V	S	G	M	M	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	E	R	I	R	E	I	R	E	E	C	K	Q	D	E	E	R	V	R	A	L	G	G	L	F	I	I	G	T	E	R	H	E	S	R	R	I	D	N	Q	L	R	G	R	A	G	R	Q	G	D	P	G	G	S	R	F	Y	V	S	F	D	D	D	L	M	R	L	F	A	S	D	R	V	I	A	M	L	D	R
Template Known Secondary structure																					T	T	T								S	S			S	S										T	S	S		S	S											S	S	S						S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		637	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.			.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		L	G	M	K	P	G	E	A	I	E	H	P	W	V	T	K	A	I	A	N	A	Q	R	K	V	E	S	R	N	F	D	I	R	K	Q	L	L	E	Y	D	D	V	A	N	D	Q	R	R	A	I	Y	S	Q	R	N	E	L	L	D	V	S	D	.	.	V	S	E	T	I	N	S	I	R	E	D	V	F	K	A	T
Query Conservation																																																																.	.
Alig confidence																																																																.	.
Template Conservation
Template Sequence		M	G	F	D	D	S	E	P	I	E	H	P	M	V	T	R	S	I	E	R	A	Q	K	R	V	E	D	R	N	F	A	I	R	K	Q	L	L	Q	F	D	D	V	L	S	R	Q	R	E	V	I	Y	A	Q	R	R	L	I	L	L	G	K	D	E	E	V	K	E	A	A	I	G	M	V	E	E	T	V	A	S	L
Template Known Secondary structure		T				S	S	S		B																																																		T	T
Template Predicted Secondary structure
Template SS confidence
		717	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.
		688	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	A	Y	I	P	P	Q	S	L	E	E	M	W	D	I	P	G	L	Q	E	R	L	K	N	D	F	D	L	D	L	P	I	A	E	W	L	D	K	E	P	E	L	H	E	E	T	L	R	E	R	I	L	A	Q	S	I	E	V	Y	Q	R	K	E	E	V	V	G	A	E	M	M	R	H	F	E	K	G	V	M
Query Conservation
Alig confidence																																				.	.
Template Conservation																																				.	.
Template Sequence		A	E	N	F	L	N	P	E	V	H	P	E	D	W	D	L	E	G	L	K	A	T	L	L	D	T	A	P	Q	L	Q	D	F	P	.	.	F	A	E	L	R	A	L	K	A	E	E	A	V	E	R	L	V	E	A	A	L	K	A	Y	E	A	R	E	A	E	L	S	P	P	L	M	R	A	V	E	R	F	V	I
Template Known Secondary structure									S	S		S	S	S													S	S					S			.	.							S		S																						S
Template Predicted Secondary structure																																				.	.
Template SS confidence
		797	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830			.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.
		768	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	T	L	D	S	L	W	K	E	H	L	A	A	M	D	Y	L	R	Q	G	I	H	L	R	G	Y	A	Q	K	D	P	K	Q	E	Y	K	R	E	S	F	S	M	F	A	A	M	L	E	S	L	K	Y	E	V	I	S	T	L	S	K	V	Q	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	V	V	D	N	A	W	K	E	H	L	H	N	L	D	V	L	R	Q	G	I	F	L	R	G	Y	G	Q	K	D	P	F	Q	E	Y	K	I	E	A	T	R	L	F	N	E	M	V	A	F	I	K	S	E	V	A	K	F	L	F	R	L	K	V	E
Template Known Secondary structure																								T	S			S	S	S	S																															S
Template Predicted Secondary structure
Template SS confidence
		875	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.