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Job DescriptionP10408
Confidence98.88%DateThu Jan 5 11:32:13 GMT 2012
Rank77Aligned Residues262
% Identity25%Templatec2f55C_
PDB info PDB header:hydrolase/dnaChain: C: PDB Molecule:polyprotein; PDBTitle: two hepatitis c virus ns3 helicase domains complexed with2 the same strand of dna
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   95....100.........110.........120.........130.........140.........150.........160.........170....
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Query Sequence  NERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADI
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Template Sequence  FQVAHLHAPTGSGKSTKVPAAY. . . AAQGYKVLVLNPSVAATLGFGAYMSKA. . . HGIDPNIRTGVRTI. . . . . TTGGSI
Template Known Secondary structure 
B




SSSSTTTTS...TTS

S
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   197..200.........210........ .220.........230.........240..... ....250......... 260.....
 
   175....180.........190.........200.........210.........220.........230.........240.........250....
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Query Sequence  TYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDS
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Template Sequence  TYSTYGKF. . . . LAD. . . . . . GGCSGGAYDIIICDECHSTD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
....T......TSSSTT

STTTT

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   266...270... ... ...280.........290......
 
   255....260.........270.........280.........290.........300.........310.........320.........330....
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Query Sequence  ETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVI
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . STTILGIGTVLDQAETA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .....................TTSSTTT..........................................
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   297..300.........310...
 
   335....340.........350.........360.........370.........380.........390.........400.........410....
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Query Sequence  IVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPT
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GARLVVLATATPPGSVTVPHPNIEEIGLSNNG
Template Known Secondary structure  ................................................T


SS
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TT
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S
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   314.....320.........330.........340.....
 
   415....420.........430.........440.........450.........460.........470.........480.........490....
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Query Sequence  NRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQA
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Template Sequence  EIPFYGKAIP. . . . . . . . . . . . . . . . . . . IEAIKGGRHLIFCHSKKKCDELAAKLTGLGLNAVAYYRGLDVSVI. . . . . P
Template Known Secondary structure  STT
...................TTSB
SSTT




B
SSS
TT
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   346...350..... ....360.........370.........380.........390.........400 .
 
   495....500.........510 .........520.........530.........540.........550.......
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Query Sequence  GYPAAVTIATNMAGRG. . . . . . . . . . . . . . . . . TDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHII
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Template Sequence  PIGDVVVVATDALFTGDFDSVIDCNTCVTQTVDFSLDP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TFTIE
Template Known Secondary structure  SSSSB


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S




B


SS.....................................S
B

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   402.......410.........420.........430......... 440....
 
   558.560.........570.........580.........
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Query Sequence  GTERHESRRIDNQLRGRSGRQGDAGSSRFYLS
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Template Conservation      
 
     

 

 

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Template Sequence  TTTVPQDAVSRSQRRGRTGR. GRSGIYRFVTP
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BTTTS
S.SS

S
S
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   448.450.........460....... ..470........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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