 |
Job Description | P10408 | Confidence | 61.95% | Date | Thu Jan 5 11:32:13 GMT 2012 |
Rank | 220 | Aligned Residues | 78 |
% Identity | 19% | Template | c1qhhB_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:protein (pcra (subunit)); |
PDBTitle: structure of dna helicase with adpnp
|
Resolution | 2.50 Å |
|
 |
  |   |
413 | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | |
|
|
|
450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | T | N | R | P | M | I | R | K | D | L | P | D | L | V | Y | M | T | E | A | E | K | I | Q | A | I | I | E | D | I | K | E | R | T | A | K | G | . |
. |
. |
. |
Q | P | V | L | V | G | T | I | S | I | E | K | S | E | L | V | S | N | E | L | T | K | A | G | I | K | H | N | V | L | N | A | K | F | H | A | N | E | A |
Query Conservation |   |
|
|
|
|
|   |   |
|   |
|   |   |
|   |
|   |   |
|   |   |   |
|   |   |
|
|   |   |
|
|   |   |   |   |   |   |
| . | . | . | . |
|
|
|
|
|
|
|   |
|
|
|   |
|
|   |
|
|   |   |
|   |   |   |
|
|   |
|   |
|
|
|
|
|   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | W | T | E | N | P | E | G | K | P | I | L | Y | Y | E | A | M | N | E | A | D | E | A | Q | F | V | A | G | R | I | R | E | A | V | E | R | G | E | R | R | Y | R | D | F | A | V | L | Y | R | T | N | A | Q | S | R | V | M | E | E | M | L | L | K | A | N | I | P | Y | Q | I | V | G | G | L | K | F | Y | D | R | K |
Template Known Secondary structure |   |
| B |
| S | S |
|
|
|
|
|
|
|
|
|
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S |
|
| G | G | G |
|
|
|
|
| S | S | G | G | G |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
|
| S | S | S |
|
| G | G | G | S |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
311 | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 |
  |
  |   |
489 | 490 |
Predicted Secondary structure |   |
 |  |
Query SS confidence |   |
|
|
Query Sequence |   |
A | I |
Query Conservation |   |
|
|
Alig confidence |   |
|
|
Template Conservation |   |
  |
|
Template Sequence |   |
E | I |
Template Known Secondary structure |   |
 |  |
Template Predicted Secondary structure |   |
 |  |
Template SS confidence |   |
|
|
  |   |
391 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|