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Job DescriptionP10408
Confidence99.79%DateThu Jan 5 11:32:13 GMT 2012
Rank19Aligned Residues349
% Identity18%Templatec1oywA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent dna helicase; PDBTitle: structure of the recq catalytic core
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6970.........80. ........90........ .100.........110.........120.........130.........140.....
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Query Sequence  AVVREASKRVFGM. RHFDVQLLGGMVLNERC. . IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRP
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Template Sequence  SGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALL. . . LNGLTVVVSPLISLXKDQVDQLQA
Template Known Secondary structure  TT

SS

TTTT


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   11........20.........30.........40.........50.........60... ......70.........80.......
 
   146...150.........160.........170 .........180.........190.........200.........210.........
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Query Sequence  LFEFLGLTVGINLPGMPAPAKREAY. . . . . . AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEA
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Template Sequence  . . . . NGVAAACLNSTQTREQQLEVXTGCRTGQIRLLYIAPERLXLDNFLEHLAHW. . . . . . . NPVLLAVDEAH. . . . . . .
Template Known Secondary structure  ....TT


TTS
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   88.90.........100.........110.........120.........130........ .140.........
 
   220.........230.........240.........250.........260.........270.........280.........290.........
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Query Sequence  RTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLY
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   300.........310.........320.........330.........340.........350.........360.........370.........
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Query Sequence  SPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CISQWGHDFRPEYAALGQ
Template Known Secondary structure  ..............................................................GG
TTSS


GGGG
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   150.........160.......
 
   380...... ...390.........400.........410.........420.........430.........440.........450.....
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Query Sequence  YFRLYEK. . . . LAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVG
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Template Sequence  LRQRFPTLPFXALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYXLXEKFKPLDQLXRYVQE. . . . . QRGKSGIIY
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   168.170.........180.........190.........200.........210.........220.........230... ......240..
 
   456...460.........470.........480.........490......... 500.........510.... .....520.........530..
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Query Sequence  TISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAA. . VTIATNMAGRGTDIV. LGGSWQAEVAALENPTAE
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Template Sequence  CNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGXGINKPNVR. . . . . . . . . . . . . . . .
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SSTT


TTS
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   243......250.........260.........270.........280.........290.........300......
 
   533......540.........550.........560.........570.........580.........590.........600.........610..
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Query Sequence  QIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGM
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . FVVHFDIPRNIESYYQETGRAGRDGLPAEAXLFYDPAD. . . . . . . XAWLRRCLEEKPQ
Template Known Secondary structure  ......................SS

SSTTS
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   307..310.........320.........330.........340.... .....350.......
 
   613......620.........630
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Query Sequence  KPGEAIEHPWVTKAIANA
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Template Conservation                    
Template Sequence  GQLQDIERHKLNAXGAFA
Template Known Secondary structure  S
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   358.360.........370.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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