 |
Job Description | P75682 | Confidence | 50.99% | Date | Thu Jan 5 12:13:03 GMT 2012 |
Rank | 482 | Aligned Residues | 83 |
% Identity | 23% | Template | d1xrsa_ |
SCOP info | TIM beta/alpha-barrel
| Cobalamin (vitamin B12)-dependent enzymes
| D-lysine 5,6-aminomutase alpha subunit, KamD
|
Resolution | 2.80 |
|
 |
  |   |
58 | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
110 | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . |
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
Query Sequence |   |
A | E | E | R | K | A | I | A | R | F | A | I | D | H | V | D | R | R | V | P | V | L | I | G | T | G | G | T | N | A | R | E | T | I | E | L | S | Q | H | A | Q | Q | A | G | A | D | G | I | V | V | I | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | Y | Y | . |
. |
. |
. |
. |
. |
. |
. |
W | K | V | S | E | A | N |
Query Conservation |   |
  |   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |
|
|   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |
|   |
|   |
|   |
| . | . | . | . | . | . | . | . | . | . |
|   |   | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |   |   |   |   |   |
|   | . | . |   |
|   |
|   |
|
|   |
|
|
|
|
|   |
|   |
|
|
|   |
|
|   |
|
|
|   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|   |
|
|   |
|
|
|   |
|
|
|
|
|
Template Sequence |   |
R | S | I | R | E | S | R | F | E | E | Y | G | D | . |
. |
K | S | G | P | L | L | Y | V | I | V | A | T | G | N | I | Y | E | D | I | T | Q | A | V | A | A | A | K | Q | G | A | D | V | I | A | V | I | R | T | T | G | Q | S | L | L | D | Y | V | P | Y | G | A | T | T | E | G | F | G | G | T | Y | A | T | Q | E | N |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
| S | S |
|  |  |  |  |  |  |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |
|
|
| T | T | G | G | G |
| S | S |
|
|
| S |
|
| S |
|
| T | T | S |
|
|
|
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
135 | . | . | . | . | 140 | . | . | . | . | . | . | . | |
|
. | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . |
  |
  |   |
|
|
|
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . |
Predicted Secondary structure |   |
. | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
L | I | R | Y | F | E | Q | V | A | D | S | V | T | L | P | V | M | L | Y | N | F | P | A |
Query Conservation |   |
. | . | . |
|   |   |   |   |   |   |
|
|   |   |   |   |   |
|
|   |
|
|
|   |
|   |
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |
|
|
|   |   |   |   |
|
|
|
|
|
|   |
|   |
|
|   |
|
Template Sequence |   |
F | R | L | M | R | E | A | L | D | K | V | G | A | E | V | G | K | Y | I | R | L | C | N | Y | C | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
|  |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
213 | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|