 |
Job Description | P75682 | Confidence | 88.25% | Date | Thu Jan 5 12:13:03 GMT 2012 |
Rank | 238 | Aligned Residues | 126 |
% Identity | 13% | Template | d1vc4a_ |
SCOP info | TIM beta/alpha-barrel
| Ribulose-phoshate binding barrel
| Tryptophan biosynthesis enzymes
|
Resolution | 1.80 |
|
 |
  |   |
73 | . | . | . | . | . | . | 80 | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | |
. | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
| . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | R | R | V | P | V | L | I | G | T | . |
. |
. |
. |
. |
. |
. |
G | G | T | N | A | R | E | T | I | E | L | S | Q | H | A | Q | Q | A | G | A | D | G | I | V | . |
V | I | N | P | Y | Y | W | K | V | S | E | A | N | L | I | R | Y | F | E | Q | V | A | D | S | V | T | L | P | V | M | L | Y | N | F | P | A | L | T |
Query Conservation |   |
  |   |   |   |   |
|
|   |
|
| . | . | . | . | . | . | . |   |   |   |
|
|   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |
|   |
|   | . |
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |
|
|   |
|
|
|   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
Template Conservation |   |
  |   |   |   |   |
|
|
|
|   |
|
|   |
|
|
|   |
|   |
|   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|   |   |   |
|   |
|
| . | . | . | . |   |   |   |
|   |   |
|
|   |   |
|   |
|
|
|
|   |
|
| . | . | . | . | . |
Template Sequence |   |
R | P | G | L | S | V | I | A | E | V | K | R | Q | S | P | S | E | G | L | I | R | E | V | D | P | V | E | A | A | L | A | Y | A | R | G | G | A | R | A | V | S | V | L | T | E | P | H | R | F | G | G | S | . |
. |
. |
. |
L | L | D | L | K | R | V | R | E | A | V | D | L | P | L | L | R | K | D | . |
. |
. |
. |
. |
Template Known Secondary structure |   |
S | S | S |
|  |  |  |  |  |  |
| S |
|
| T | T | T |
|
|
|
| S |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |
|
|
| S | S | S |
|
|
| . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
| S |
|  |  |  |  | S | . | . | . | . | . |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
| . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
| . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
43 | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | |
|
|
|
. | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | |
|
|
|
|
  |
  |   |
145 | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | Q | D | L | T | P | A | L | V | K | T | L | A | D | S | R | S | N | I | I | G | I | K | D | T | I | D | S | V | A | H | L | R | S | M | I | H | T | V | K | G | A | H | P | H | F | T | V | L | C | G | Y | D | D | H | L | F | N | T | L | L | L | G | G | D |
Query Conservation |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |
|   |
|
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |
|
|
|
|   |   |
|
|   |   |
|   |   |   |
|
|
|   |
|
|
|
|   |   |   |
|   | . |   |   |
|   |
|
|   |   |   |
|   |   |
|
|
|   |   |
|
|
|
|   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |
Template Sequence |   |
. |
F | V | V | D | P | F | M | L | E | E | A | R | A | F | G | A | S | A | A | L | L | I | V | A | L | L | G | . |
E | L | T | G | A | Y | L | E | E | A | R | R | L | G | L | E | A | L | V | E | V | H | T | E | R | E | L | E | I | A | L | E | A | G | A | E |
Template Known Secondary structure |   |
. |
|
|
| S |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  |  |  |  | G | . | G | G |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |
| S |  |  |  |  |  |  |  |  |  |  | T |
| S |
Template Predicted Secondary structure |   |
. |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
114 | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | |
. | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|