Job Description P75682 Confidence 73.16% Date Thu Jan 5 12:13:03 GMT 2012 Rank 363 Aligned Residues 210 % Identity 12% Template c3hcwB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus Resolution 2.20 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		D	K	P	G	T	A	A	L	I	D	D	L	I	K	A	G	V	D	G	L	F	F	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	R	V	P	.	V	L	I	G	T	G	G	T	N	A	R	E	T	I	E	L	S	Q	H	A	Q	Q	A	G	A	D
Query Conservation																																																							.
Alig confidence																																																							.
Template Conservation
Template Sequence		M	N	D	L	M	D	E	V	Y	K	M	I	K	Q	R	M	V	D	A	F	I	L	L	Y	S	K	E	N	D	P	I	K	Q	M	L	I	D	E	S	M	P	F	I	V	I	G	K	P	T	S	D	I	D	H	Q	F	T	H	I	D	N	D	N	I	L	A	S	E	N	L	T	R	H	V	I	E	Q	G	V	D
Template Known Secondary structure															T	T			S					S				T	T										T	T							S				S	S	G	G	G	S	S																					T			S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																		.																																				.
Query SS confidence																																		.																																				.
Query Sequence		G	I	V	V	I	N	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	T	L	P	V	.	M	L	Y	N	F	P	A	L	T	G	Q	D	L	T	P	A	L	V	K	T	L	A	D	S	R	S	N	I	I	G	I	K	D	T	I	.	D	S	V	A	H	L	R	S	M	I	H
Query Conservation																																		.																																				.
Alig confidence																																		.																																				.
Template Conservation
Template Sequence		E	L	I	F	I	T	E	K	G	N	F	E	V	S	K	D	R	I	Q	G	F	E	T	V	A	S	Q	F	N	L	D	Y	Q	I	I	E	T	S	N	E	R	E	V	I	L	N	Y	M	Q	N	L	H	T	R	L	K	D	P	N	I	K	Q	A	I	I	S	L	D	A	M	L	H	L	A	I	L	S	V	L	Y
Template Known Secondary structure									S	S																			T	T										S																			S	S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	K	G	A	H	P	H	F	T	V	L	C	G	Y	D	D	H	L	F	N	T	L	L	L	G	G	D	G	A	I	S	A	S	G	N	F	A	P	Q	V	S	V	N	L	L	K	A	W	R	D	G	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	N	I	E	I	P	K	D	V	M	T	A	T	F	N	D	S	Y	L	T	E	I	A	S	P	P	Q	T	C	I	D	I	K	P	R	M	L	G	Q	Q	A	G	S	A	I	L	N	I	L	K	N	D
Template Known Secondary structure			T	T			T	T	T	T							S		S					T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions