 |
Job Description | P75682 | Confidence | 87.36% | Date | Thu Jan 5 12:13:03 GMT 2012 |
Rank | 246 | Aligned Residues | 119 |
% Identity | 10% | Template | c3fs2A_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase; |
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate2 aldolase from bruciella melitensis at 1.85a resolution
|
Resolution | 1.85 Å |
|
 |
  |   |
73 | . | . | . | . | . | . | 80 | . | . | . | . | . | |
. | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | |
|
|
. | . | . | . | 110 | . | . | . | . | . | |
. | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  | . | . | . |  |  |
|
|
|
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
D | R | R | V | P | V | L | I | G | T | G | G | T | . |
N | A | R | E | T | I | E | L | S | Q | H | A | Q | Q | A | G | A | D | G | I | . |
. |
. |
V | V | I | N | P | Y | Y | W | K | V | . |
S | E | A | N | L | I | R | Y | F | E | Q | V | A | D | S | V | T | L | P | V | M | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |   |   |   |
|
|   |
|
|   |   |   | . |
|
|   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |
|   |
| . | . | . |   |
|   |
|
|   |   |   |   |   | . |
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |
|
|   |
| . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |
|   |   |
|
|
|
|
|
|   |   |   |
|   |
|   |
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |
|   |
|   |   |   |   |   |
|
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |
Template Sequence |   |
S | A | P | L | A | L | I | A | G | P | C | Q | M | E | T | R | D | H | A | F | E | M | A | G | R | L | K | E | M | T | D | K | L | G | I | G | L | V | Y | K | S | S | F | D | K | A | N | I | G | L | E | K | A | L | E | V | F | S | D | L | K | K | E | Y | G | F | P | V | L | T | D | I | H | T | E | E | Q | C | A | A |
Template Known Secondary structure |   |
T | S |
|
|  |  |  |  |  |
| S | B |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |
| B |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
| S |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
18 | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
138 | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | |
170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
Y | N | F | P | A | L | T | G | Q | D | L | T | P | A | L | V | K | T | L | A | D | S | R | S | N | I | I | G | I | K | D | T | . |
I | D | S | V | A | H | L | R | S | M | I | H | T | V | K | G | A | H | P | H | F | T | V | L | C |
Query Conservation |   |
. | . | . | . | . | . | . |
|
|   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |
|   |
|
|
|   |
| . |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
Alig confidence |   |
. | . | . | . | . | . | . |
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|
|   |   |
|
|
|
|   |   | . | . |   |   |
|   |   |
|
|   |   |   |
|   | . |   |
|
|
|
|   |
|
|   |
|   |   |   |   |   |   |
|   |   |   |
|
|
|   |
|   |   |   |
|
|   |   |
|   |
|   |
Template Sequence |   |
V | A | P | V | V | D | V | L | Q | I | P | A | F | L | . |
. |
C | R | Q | T | D | L | L | I | A | A | A | R | . |
T | G | R | V | V | N | V | K | K | G | Q | F | L | A | P | W | D | M | K | N | V | L | A | K | I | T | E | S | G | N | P | N | V | L | A | T |
Template Known Secondary structure |   |
 | T | T | T |
| S |  |  |  |  |
| G | G | G | . | . | T | T |
|  |  |  |  |  |  |  |  |  | . | T | T | S |  |  |  |  |  |
|
| T | T |
|
| G | G | G |  |  |  |  |  |  |  |  |  | T | T | T |
|
|
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|  |  |
| . | . |
|
|
|  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
107 | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | |
|
. | . | . | . | . | . | . | . | . | 130 | . | . | |
. | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|