Job Description P75682 Confidence 60.64% Date Thu Jan 5 12:13:03 GMT 2012 Rank 427 Aligned Residues 194 % Identity 16% Template c3ctpB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose Resolution 1.41 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.											.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	P	G	T	A	A	L	I	D	D	L	I	K	A	G	V	D	G	L	F	F	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	R	V	P	V	L	I	G	.	.	.	.	.	.	.	.	.	.	T	G	G	T	N	A	R	E	T	I	E	L	S
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	K	E	K	E	K	T	Y	L	E	V	L	Q	S	H	R	V	A	G	I	I	A	S	R	S	Q	C	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	Y	A	N	I	D	I	P	V	V	A	F	E	N	H	I	L	D	N	I	I	T	I	S	S	D	N	Y	N	G	G	R	M	A	F
Template Known Secondary structure																T	T		S						S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	T	T			S						S	S				T	T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	A	Q	Q	A	G	A	D	G	I	V	V	I	N	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	T	L	P	V	M	L	Y	N	F	P	A	L	T	G	Q	D	L	T	P	A	L	V	K	T	L	A	D	S	R	S	N	I	I	G	I	K	D	T	I	D	S	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	H	L	Y	E	K	G	C	R	K	I	L	H	I	K	G	P	E	V	F	E	A	T	E	L	R	Y	K	G	F	L	D	G	A	R	A	K	D	L	E	I	D	F	I	E	F	Q	H	D	F	Q	V	K	M	L	E	E	D	I	N	S	M	K	D	I	V	N	Y	D	G	I	F	V	F	N	D	I	A	A	A
Template Known Secondary structure							T	T			S								T	T																		T	T									S	S	S			G	G	G	G	G				T	T	G	G	G	G	G	G	S	S					S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	R	S	M	I	H	T	V	K	G	A	H	P	H	F	T	V	L	C	G	Y	D	D	H	L	F	N	T	L	L	L	G	G	D	G	A	I	S	A	S	G	N	F	A	P	Q	V	S	V	N	L	L	K	A	W	R	D	G	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	M	R	A	L	K	K	R	G	V	S	I	P	Q	E	V	Q	I	I	G	F	D	N	S	F	I	G	E	L	L	Y	P	S	L	T	T	I	N	Q	P	I	E	A	L	A	Y	T	I	I	E	L	L	I	K	I	I	N	G	E
Template Known Secondary structure										T	T			T	T	T	T						S	B			T					S	S	S			B																							T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions