Job Description P75682 Confidence 85.74% Date Thu Jan 5 12:13:03 GMT 2012 Rank 271 Aligned Residues 244 % Identity 17% Template c2zrvC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:isopentenyl-diphosphate delta-isomerase; PDBTitle: crystal structure of sulfolobus shibatae isopentenyl2 diphosphate isomerase in complex with reduced fmn. Resolution 2.30 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.				.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence		I	P	P	V	S	T	I	F	T	A	D	G	Q	L	D	K	P	G	T	A	A	L	I	D	D	L	I	K	A	G	V	D	G	L	F	F	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	R	V	P	V	L	I	G	T	G	G	T	N	.	.	.	A
Query Conservation																																																																														.	.	.
Alig confidence																																				.	.	.	.	.																																						.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		V	P	V	M	V	T	G	M	T	G	G	R	N	E	L	G	R	I	N	K	I	I	A	E	V	A	E	K	F	G	I	P	M	G	.	.	.	.	.	V	G	S	Q	R	V	A	I	E	K	A	E	A	R	E	S	F	A	I	V	R	K	V	A	P	T	I	P	I	I	A	N	L	G	M	P	Q	L	V	K	G
Template Known Secondary structure		S	S									S	S																		T					.	.	.	.	.											G	G	G	S											S	S	S								G	G	G	G	T	T	T
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.						.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.									110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.
Query Sequence		R	E	T	I	E	L	S	Q	H	A	Q	Q	A	G	A	D	G	I	V	V	I	N	.	.	.	.	.	.	.	.	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	T	L	P	V	M	L	Y	N	F	P	A	L	T	G	Q	D	L	T	P	A	L	V	K	T	L	A	D	S
Query Conservation																								.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		Y	G	L	K	E	F	Q	D	A	I	Q	M	I	E	A	D	A	I	A	V	H	L	N	P	A	Q	E	V	F	Q	P	E	G	E	P	E	Y	Q	I	Y	A	L	E	K	L	R	D	I	S	K	E	L	S	V	P	I	I	V	.	.	.	.	K	E	S	G	N	G	I	S	M	E	T	A	K	L	L	Y	S	Y
Template Known Secondary structure														T	T		S														S	S	S							T														S	S					.	.	.	.			S	S	S													T
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		160	.	.	.	.	.	.	.	.	.	170	.																													.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Query Sequence		R	S	N	I	I	G	I	K	D	T	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	A	H	L	R	S	M	I	H	T	V	K	G	A	H	P	H	F	T	V	L	C	G	.	.	.	Y	D	D	H	L	F	N	T	L	L	L	G	G
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation
Template Sequence		G	I	K	N	F	D	T	S	G	Q	G	G	T	N	W	I	A	I	E	M	I	R	D	I	R	R	G	N	W	K	A	E	S	A	K	N	F	L	D	W	G	V	P	T	A	A	S	I	M	E	V	R	Y	S	V	P	D	S	F	L	V	G	S	G	G	I	R	S	G	L	D	A	A	K	A	I	A	L	G	A
Template Known Secondary structure		T									B	T	S	B													T	T		T								T	T	T		S		B												S	T	T							S	S			S											T
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.													.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	G	A	I	S	A	S	G	N	F	A	P	Q	V	S	V	N	L	L	K	A	W	R	D	G	D	V	A	K	A	A	G	Y	H	Q	T	L	L	Q	I	P	Q	M	Y	Q	L	D	T	P	.	.	.	.	.	.	.	.	.	.	.	.	F	V	N	V	I	K	E	A	I	V	L	C	G	R	P
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence		D	I	A	G	M	A	L	P	V	L	K	S	.	.	.	.	.	.	.	.	.	A	I	E	G	K	E	S	L	E	Q	F	F	R	K	I	I	F	E	L	K	A	A	M	M	L	T	G	S	K	D	V	D	A	L	K	K	T	S	I	V	I	L	G	K	L	K	E	W	A	E	Y	R	G	I	N
Template Known Secondary structure		S												.	.	.	.	.	.	.	.	.																										T	T			B					T	T	S															T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.										.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions