Job Description P31450 Confidence 100.00% Date Thu Jan 5 11:47:41 GMT 2012 Rank 18 Aligned Residues 183 % Identity 15% Template c8ldhA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:m4 apo-lactate dehydrogenase; PDBTitle: refined crystal structure of dogfish m4 apo-lactate2 dehydrogenase Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	F	S	V	V	V	A	G	G	G	S	T	F	T	P	G	I	V	L	M	L	L	A	N	Q	D	R	F	P	L	R	A	L	K	F	Y	D	N	D	G	A	R	Q	E	V	I	A	E	A	C	K	V	I	L	K	E	K	A	P	D	I	A	F	S	Y	T	T	D	P	E	V	A	F	S	D	V	D	F	V
Query Conservation
Alig confidence																										.	.	.	.																																									.	.
Template Conservation																										.	.	.	.																																									.	.
Template Sequence		S	Y	N	K	I	T	V	V	G	V	G	A	V	G	M	A	C	A	I	S	I	L	M	K	.	.	.	.	D	L	A	D	E	V	A	L	V	D	V	M	E	D	K	L	K	G	E	M	M	D	L	Q	H	G	S	L	F	L	H	T	A	K	I	V	S	G	K	D	.	.	Y	S	V	S	A	G	S	K	L	V
Template Known Secondary structure			S	S								S												T	T	.	.	.	.	T			S							S															T	G	G	G										S	S	.	.	G	G	G	G	T	T		S
Template Predicted Secondary structure																										.	.	.	.																																									.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		M	A	H	I	R	V	G	K	Y	P	M	R	E	L	D	E	K	I	P	L	R	H	G	V	V	G	Q	E	T	C	G	P	G	G	I	A	Y	G	M	R	S	I	G	G	V	L	E	L	V	D	Y	M	E	K	Y	S	P	N	A	W	M	L	N	Y	S	N	P	A	A	I	V	A	E	A	T	R	R	L	.	.
Query Conservation																																																																																.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	T	A	G	A	R	Q	Q	E	G	E	S	R	L	N	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	N	V	N	I	F	K	F	I	I	P	N	I	V	K	H	S	P	D	C	I	I	L	V	V	S	N	P	V	D	V	L	T	Y	V	A	W	K	L	S	G
Template Known Secondary structure											T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T							S	S	S													T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure														.	.																														.	.	.
Query SS confidence														.	.																														.	.	.
Query Sequence		R	P	N	A	K	I	L	N	I	C	D	M	.	.	P	I	G	I	E	S	R	M	A	Q	I	V	G	L	Q	D	R	K	Q	M	R	V	R	Y	Y	G	L	N	H	.	.	.	W	W	S	A	I	S	R	S	F	R	K	G
Query Conservation														.	.																														.	.	.
Alig confidence														.	.															.												.			.	.	.
Template Conservation																														.												.
Template Sequence		L	P	M	H	R	I	I	G	S	G	C	N	L	D	S	A	R	F	R	Y	L	M	G	E	R	L	G	V	.	H	S	C	S	C	H	G	W	V	I	G	.	E	H	G	D	S	V	P	S	V	W	S	G	M	N	V	A	S
Template Known Secondary structure				G	G	G					T	T																T	S	.		T	T	T							B	.	S	S	S	T	T											T	T
Template Predicted Secondary structure																														.												.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions