Job Description P31450 Confidence 100.00% Date Thu Jan 5 11:47:41 GMT 2012 Rank 42 Aligned Residues 188 % Identity 16% Template c7mdhA_ PDB info PDB header:chloroplastic malate dehydrogenase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure												.																			.												.	.
Query SS confidence												.																			.												.	.
Query Sequence		T	K	F	S	V	V	V	A	G	G	.	G	S	T	F	T	P	G	I	V	L	M	L	L	A	N	Q	D	R	.	F	P	L	R	A	L	K	F	Y	D	N	.	.	D	G	A	R	Q	E	V	I	A	E	A	C	K	V	I	L	K	E	K	A	P	D	I	A	F	S	Y	T	T	D	P	E	V	A	F	S	D
Query Conservation												.																			.												.	.
Alig confidence												.																			.												.	.																.	.
Template Conservation																																																												.	.
Template Sequence		K	L	V	N	I	A	V	S	G	A	A	G	M	I	S	N	H	L	L	F	K	L	A	S	G	E	V	F	G	Q	D	Q	P	I	A	L	K	L	L	G	S	E	R	S	F	Q	A	L	E	G	V	A	M	E	L	E	D	S	.	.	L	Y	P	L	L	R	E	V	S	I	G	I	D	P	Y	E	V	F	E	D
Template Known Secondary structure										T	T	T	S													T	T	T	T		T	T											G	G	G													T	T	.	.	T		T	T								S						T	T	T
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		V	D	F	V	M	A	H	I	R	V	G	K	Y	P	M	R	E	L	D	E	K	I	P	L	R	H	G	V	V	G	Q	E	T	C	G	P	G	G	I	A	Y	G	M	R	S	I	G	G	V	L	E	L	V	D	Y	M	E	K	Y	S	.	P	N	A	W	M	L	N	Y	S	N	P	A	A	I	V	A	E	A	T
Query Conservation																																																														.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	W	A	L	L	I	G	A	K	P	R	G	P	G	M	E	R	A	A	L	L	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	Q	I	F	A	D	Q	G	K	A	L	N	A	V	A	S	K	N	V	K	V	L	V	V	G	N	P	C	N	T	N	A	L	I	C
Template Known Secondary structure			S												T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																S		T	T							S	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		157	.	.	160				.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure						.	.	.												.																														.	.	.
Query SS confidence						.	.	.												.																														.	.	.
Query Sequence		R	R	L	R	.	.	.	P	N	A	K	I	L	N	I	C	D	M	.	P	I	G	I	E	S	R	M	A	Q	I	V	G	L	Q	D	R	K	Q	M	R	V	R	Y	Y	G	L	N	H	.	.	.	W	W	S	A	I	S	R	S	F	R	K	G
Query Conservation						.	.	.												.																														.	.	.
Alig confidence						.	.	.												.															.															.	.	.
Template Conservation																																			.
Template Sequence		L	K	N	A	P	D	I	P	A	K	N	F	H	A	L	T	R	L	D	E	N	R	A	K	C	Q	L	A	L	K	A	G	V	.	F	Y	D	K	V	S	N	V	T	I	W	G	N	H	S	T	T	Q	V	P	D	F	L	N	A	K	I	D	G
Template Known Secondary structure				T		T	T	S		G	G	G																				T	T	S	.		G	G	G								B		S	S	T	T						S	S				T	T
Template Predicted Secondary structure																																			.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions