 |
Job Description | P31450 | Confidence | 96.37% | Date | Thu Jan 5 11:47:41 GMT 2012 |
Rank | 295 | Aligned Residues | 77 |
% Identity | 14% | Template | c3o8qB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:shikimate 5-dehydrogenase i alpha; |
PDBTitle: 1.45 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae
|
Resolution | 1.45 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | K | F | S | V | V | V | A | G | G | G | S | T | F | T | P | G | I | V | L | M | L | L | A | N | Q | D | R | F | P | L | R | A | L | K | F | Y | D | N | D | G | A | R | Q | E | V | I | A | E | A | C | K | V | I | L | K | E | K | A | P | D | I | A | F | S | Y | T | T | D | P | E | V | A | F | S | D | V | D | F | V |
Query Conservation |   |
  |   |   |
|
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |
|
|
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   | . | . | . | . | . |   |   |
|   |   |   |
|   |
|   |
|
|
|   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
Template Sequence |   |
K | G | A | T | I | L | L | I | G | A | G | G | A | A | R | G | V | L | K | P | L | L | . |
. |
. |
. |
. |
D | Q | Q | P | A | S | I | T | V | T | N | R | T | F | A | K | A | E | Q | L | A | E | L | V | A | A | Y | G | E | . |
. |
. |
. |
. |
. |
. |
. |
V | K | A | Q | A | F | E | Q | L | K | Q | S | Y | D | V | I |
Template Known Secondary structure |   |
T | T |
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | T | T |
|
| S |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  | T | G | G | G | S |
| . | . | . | . | . | . | . | . |  |  |  |  |  | G | G | G |
|
| S |
|
| S |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
122 | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | A | H | I | R | V | G | K | Y | P |
Query Conservation |   |
|
|
|
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |   |   |   |   |
Template Sequence |   |
I | N | S | T | S | G | E | L | P | A |
Template Known Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|
Template Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
  |   |
189 | 190 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|