Job Description P31450 Confidence 100.00% Date Thu Jan 5 11:47:41 GMT 2012 Rank 49 Aligned Residues 172 % Identity 15% Template c3dl2A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 variant 3; PDBTitle: hexagonal structure of the ldh domain of human ubiquitin-2 conjugating enzyme e2-like isoform a Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	K	F	S	V	V	V	A	G	G	G	S	T	F	T	P	G	I	V	L	M	L	L	A	N	Q	D	R	F	P	L	R	A	L	K	F	Y	D	N	D	G	A	R	Q	E	V	I	A	E	A	C	K	V	I	L	K	E	K	A	P	D	I	A	F	S	Y	T	T	D	P	E	V	A	F	S	D	V	D	F
Query Conservation
Alig confidence				.	.																						.	.	.	.													.														.	.	.	.	.														.
Template Conservation				.	.																						.	.	.	.													.														.	.	.	.	.														.
Template Sequence		V	N	.	.	K	I	T	V	V	G	G	G	E	L	G	I	A	C	T	L	A	I	S	A	K	.	.	.	.	G	I	A	D	R	L	V	L	L	D	L	S	.	E	G	T	K	G	A	T	M	D	L	E	I	F	.	.	.	.	.	N	L	P	N	V	E	I	S	K	D	L	S	A	.	S	A	H	S	K	V
Template Known Secondary structure				.	.								S														.	.	.	.	T			S								S	.		G	G	G		T	T							.	.	.	.	.	T		T	T					S		G	G	G	.	G	T	T		S
Template Predicted Secondary structure				.	.																						.	.	.	.													.														.	.	.	.	.														.
Template SS confidence
		182	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.						230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	A	H	I	R	V	G	K	Y	P	M	R	E	L	D	E	K	I	P	L	R	H	G	V	V	G	Q	E	T	C	G	P	G	G	I	A	Y	G	M	R	S	I	G	G	V	L	E	L	V	D	Y	M	E	K	Y	S	P	N	A	W	M	L	N	Y	S	N	P	A	A	I	V	A	E	A	T	R	R	L	R
Query Conservation
Alig confidence								.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	F	T	V	N	.	.	.	.	.	S	Q	S	Y	L	D	V	V	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	D	M	F	R	A	L	V	P	A	L	G	H	Y	S	Q	H	S	V	L	L	V	A	S	Q	P	V	E	I	M	T	Y	V	T	W	K	L	S
Template Known Secondary structure								.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T								S	T	T							S	S	S
Template Predicted Secondary structure								.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.						.	.	.	.	.	260	.	.	.	.																					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
				161	.	.	.	.	.	.	.		.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.	.									.				.																														.	.	.
Query SS confidence		.	.									.				.																														.	.	.
Query Sequence		.	.	P	N	A	K	I	L	N	I	.	C	D	M	.	P	I	G	I	E	S	R	M	A	Q	I	V	G	L	Q	D	R	K	Q	M	R	V	R	Y	Y	G	L	N	H	.	.	.	W	W	S	A	I	S	R	S	F	R	K	G
Query Conservation		.	.									.				.																														.	.	.
Alig confidence		.	.									.				.															.												.			.	.	.
Template Conservation																															.												.
Template Sequence		T	F	P	A	N	R	V	I	G	I	G	C	N	L	D	S	Q	R	L	Q	Y	I	I	T	N	V	L	K	A	.	Q	T	S	G	K	E	V	W	V	I	G	.	E	Q	G	E	D	K	V	L	T	W	S	G	E	E	V	V	S
Template Known Secondary structure		T			G	G	G					T	T													T	T	S			.				S							B	.	S		S	S	S
Template Predicted Secondary structure																															.												.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions