Phyre 2 alignment of P0AAI9 with c2vz8B

Job Description P0AAI9
Confidence 100.00% Date Thu Jan 5 11:13:02 GMT 2012

Rank 21 Aligned Residues 286

% Identity 22% Template c2vz8B_

PDB info PDB header:transferase Chain: B: PDB Molecule:fatty acid synthase; PDBTitle: crystal structure of mammalian fatty acid synthase

Resolution 3.2 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence	T	Q	F	A	F	V	F	P	G	Q	G	S	Q	T	V	G	M	L	A	D	M	A	A	S	Y	P	I	V	E	E	T	F	A	E	A	S	A	A	L	.	.	.	G	Y	D	L	W	A	L	T	Q	Q	G	P	A	E	E	L	N	K	T	W	Q	T	Q	P	A	L	L	T	A	S	V	A	L	Y	R	V	W	Q
Query Conservation																																								.	.	.
Alig confidence																							.																	.	.	.
Template Conservation																							.
Template Sequence	R	P	V	W	F	I	C	S	G	M	G	A	Q	W	Q	G	M	G	L	S	L	M	.	R	L	D	R	F	R	D	S	I	L	R	S	D	Q	A	L	K	P	L	G	L	R	V	S	D	L	L	L	S	T	D	E	A	V	L	D	D	I	V	S	S	F	V	S	L	T	S	I	Q	I	A	L	I	D	L	L	T
Template Known Secondary structure										T	T				T	T	T	T	S	S	T	T	.	S	S															G	G	G	T												T	T	S	S	S
Template Predicted Secondary structure																							.
Template SS confidence
	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.		.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	Q	G	G	K	A	P	A	M	M	A	G	H	S	L	G	E	Y	S	A	L	V	C	A	G	V	I	D	F	A	D	A	V	R	L	V	E	M	R	G	K	F	M	Q	E	A	V	P	E	G	T	G	A	M	A	A	I	I	G	L	D	D	A	S	I	A	K	A	C	E	E	A	A	E	G	Q	V	V	S	P
Query Conservation
Alig confidence				.																																													.																				.	.	.	.	.	.
Template Conservation				.																																													.																				.	.	.	.	.	.
Template Sequence	S	L	G	.	L	Q	P	D	G	I	I	G	H	S	L	G	E	V	A	C	G	Y	A	D	G	C	L	T	Q	E	E	A	V	L	S	S	Y	W	R	G	Y	C	I	K	E	A	N	V	.	L	P	G	A	M	A	A	V	G	L	S	W	E	E	C	K	Q	R	C	.	.	.	.	.	.	P	P	G	I	V	P
Template Known Secondary structure		T	T	.				S						T	T									T	T	S	S																			S			.									S	S							T	T		.	.	.	.	.	.		T	T
Template Predicted Secondary structure				.																																													.																				.	.	.	.	.	.
Template SS confidence
	569	570	.		.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.		.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.							.	.	.	.	.	640

	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																								.																							.	.
Query SS confidence																																								.																							.	.
Query Sequence	V	N	F	N	S	P	G	Q	V	V	I	A	G	H	K	E	A	V	E	R	A	G	A	A	C	K	A	A	G	A	K	R	A	L	P	L	P	V	S	.	V	P	S	H	C	A	L	M	K	P	A	A	D	K	L	A	V	E	L	A	K	I	.	.	T	F	N	A	P	T	V	P	V	V	N	N	V	D	V	K
Query Conservation																																								.																							.	.
Alig confidence																															.									.																							.	.
Template Conservation																															.
Template Sequence	A	C	H	N	S	K	D	T	V	T	I	S	G	P	Q	A	A	M	S	E	F	L	Q	Q	L	K	R	E	D	V	.	F	V	K	E	V	R	T	G	G	I	A	F	H	S	Y	F	M	E	S	I	A	P	T	L	L	R	Q	L	R	K	V	I	L	D	P	K	P	R	S	K	R	W	L	S	T	S	I	P	E
Template Known Secondary structure						T	T								S					T	T	S	T	T	T	T	T	T			.							S	S	S			T	T	S	G	G	G	T	T	T												S		S			B			T	T				S	S	S		G
Template Predicted Secondary structure																															.
Template SS confidence
	641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670		.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.

	236	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence	C	E	T	N	G	D	A	.	.	.	.	I	R	D	A	L	V	R	Q	L	Y	N	P	V	Q	W	T	K	S	V	E	Y	M	A	A	Q	G	V	E	H	L	Y	E	V	G	P	G	K	V	L	T	G	L	T	K	R	I	V	D	T	L	T	A	S	A	L	N	E
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.																											.	.
Template Conservation																																						.	.
Template Sequence	A	Q	W	Q	G	S	L	A	R	T	F	S	A	E	Y	S	V	N	N	L	V	S	P	V	L	F	Q	E	A	L	Q	H	V	P	A	H	A	.	.	V	V	V	E	I	A	P	H	A	L	L	Q	A	V	L	K	R	S	L	E	S	S	C	T	I	I	P	L	M
Template Known Secondary structure	G	G	T	T	S	S	S	T	T	B												S		B							T	T	S		S	S		.	.						S	S	S		T	T								S		T	T	S					S
Template Predicted Secondary structure																																						.	.
Template SS confidence
	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.			.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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