Job Description P0AAI9 Confidence 100.00% Date Thu Jan 5 11:13:02 GMT 2012 Rank 24 Aligned Residues 292 % Identity 22% Template c2uvaI_ PDB info PDB header:transferase Chain: I: PDB Molecule:fatty acid synthase beta subunits; PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400 Resolution 3.10 Å

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		3	.	.	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40																.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60
Predicted Secondary structure													.	.														.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Query SS confidence													.	.														.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Query Sequence		Q	F	A	F	V	F	P	G	Q	G	S	.	.	Q	T	V	G	M	L	A	D	M	A	A	S	Y	.	P	I	V	E	E	T	F	A	E	A	S	A	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	D	L	W	A	L	T	Q	Q	G	.	.	.	.	P	A	E	E	L	N	K	T	W
Query Conservation													.	.														.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Alig confidence													.	.														.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template Conservation
Template Sequence		K	I	Y	S	I	F	G	G	Q	G	N	I	E	E	Y	F	D	E	L	R	E	I	Y	T	T	Y	P	S	F	V	E	D	L	I	T	S	I	A	E	L	L	Q	S	L	A	R	E	W	D	A	V	K	Q	Y	P	K	G	L	D	I	L	Q	W	L	H	N	P	E	S	Q	P	D	T	D	Y	L	V	S	A	P
Template Known Secondary structure											S	S		S																																		S								S	S										S	G	G	G									S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.								.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.								110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Query Sequence		Q	T	Q	P	A	L	L	T	A	S	V	A	L	Y	R	V	W	Q	Q	Q	G	G	K	A	P	.	.	.	.	.	.	.	A	M	M	A	G	H	S	L	G	E	Y	S	A	L	V	C	A	G	V	I	D	F	A	D	.	.	.	.	.	.	.	A	V	R	L	V	E	M	R	G	K	F	M	Q	E	A	V	P
Query Conservation																											.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	F	P	L	I	G	L	V	Q	L	A	H	Y	M	I	T	C	K	T	L	G	R	E	P	G	E	L	L	E	R	F	S	G	T	T	G	H	S	Q	G	I	V	V	A	A	A	I	A	T	A	R	T	W	D	E	F	A	T	A	A	K	R	A	V	E	L	L	F	W	I	G	L	R	S	Q	Q	A	Y	P
Template Known Secondary structure																							T									T		S					S	S	T								T	T	S			S	S																									S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		127	.	.																		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query Sequence		E	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	M	A	A	I	I	G	L	D	D	A	S	I	A	K	A	C	E	E	A	.	.	.	.	A	E	G	Q	V	V	S	P	V	N	F	N	S	P	G	Q	V	V	I	A	G	H	K	E	A	V	E	R	A	G	A	A	C	K	A
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		R	T	S	L	A	P	S	T	L	Q	D	S	V	E	N	G	E	G	T	P	T	P	M	L	S	I	R	D	L	T	R	S	A	V	Q	E	H	I	D	A	T	N	Q	H	L	P	E	D	R	H	I	G	I	S	L	V	N	S	A	R	N	F	V	V	T	G	P	P	I	S	L	Y	G	L	N	L	R	L	R	K
Template Known Secondary structure																T	T			S			S						T																T	S		G	G	G									S	S	S						S														T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		186	.																		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.														.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.														.	.	.
Query Sequence		A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	R	A	L	P	L	P	V	S	V	P	S	H	C	A	L	M	K	P	A	A	D	K	L	A	V	E	L	A	K	I	T	F	.	.	N	A	P	T	V	P	V	V	N	N	V	D	V	.	.	.	K	C	E	T	N	G	D	A	I
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.														.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.														.	.	.
Template Conservation
Template Sequence		V	K	A	P	T	G	L	D	Q	N	R	I	P	F	T	Q	R	K	A	R	F	V	N	R	F	L	P	I	T	A	P	F	H	S	P	Y	L	A	G	A	H	A	H	I	L	G	D	V	D	D	M	K	I	P	A	S	S	L	V	I	P	V	Y	D	T	K	T	G	Q	D	L	R	E	L	G	D	E	D	I	I
Template Known Secondary structure		T	S			S	S				T	T	S		G	G	G	S										S			S			S	S	G	G	G											T	S	S	S				G	G	G		S	S		B	B		S	S	S			B	G	G	G	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		R	D	A	L	V	R	Q	L	Y	N	P	V	Q	W	T	K	S	V	E	Y	M	A	A	Q	G	V	E	H	L	Y	E	V	G	P	G	K	V	.	.	L	T	G	L	T	K	R	I	V	D	T	L	T	A	S	A	L
Query Conservation																																							.	.
Alig confidence																					.	.	.																.	.
Template Conservation																					.	.	.
Template Sequence		P	E	L	V	R	M	I	T	Y	D	P	V	N	W	E	T	A	T	V	.	.	.	F	P	D	A	T	H	I	V	D	F	G	P	G	G	V	S	G	I	G	V	L	T	N	R	N	K	D	G	T	G	V	R	V	I
Template Known Secondary structure										T	S		B						T		.	.	.		S	S		S						S	S	S	T	T	T	S									T	T	T	T	T
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.				.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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