Job Description Q46810 Confidence 99.94% Date Thu Jan 5 12:34:38 GMT 2012 Rank 22 Aligned Residues 189 % Identity 15% Template c3polA_ PDB info PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: 2.3 angstrom crystal structure of 3-deoxy-manno-octulosonate2 cytidylyltransferase (kdsb) from acinetobacter baumannii. Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	I	D	C	I	I	T	A	A	G	L	S	S	R	M	G	Q	W	K	M	M	L	P	W	E	Q	G	T	I	L	D	T	S	I	K	N	A	L	Q	F	C	S	R	I	I	L	V	T	G	Y	R	G	N	E	L	H	E	R	Y	A	N	Q	S	N	I	T	I	I	H	N	P	D	Y	A	Q	G	L	L	T
Query Conservation
Alig confidence																			.
Template Conservation																			.
Template Sequence		H	M	K	H	I	V	I	P	A	R	F	S	S	S	R	L	P	.	G	K	P	L	L	L	I	H	D	R	P	M	I	L	R	V	V	D	Q	A	K	K	V	E	G	F	D	D	L	C	V	A	T	D	D	E	R	I	A	E	I	C	R	A	E	G	V	D	V	V	L	T	S	A	D	H	P	S	G	T	D	R
Template Known Secondary structure												S			T	T	S	T	.	T	G	G	G	S			T	T												T	T			S		S							S										T	T	T								S
Template Predicted Secondary structure																			.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																								.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure											.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Query SS confidence											.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Query Sequence		S	V	K	A	A	V	P	A	V	.	.	Q	T	E	H	C	F	L	T	H	G	D	M	P	T	L	T	I	D	I	F	R	K	I	W	S	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	G	A	I	L	P	L	H	N	G	I	P	G	H	P	I	.	.
Query Conservation											.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Alig confidence											.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation
Template Sequence		L	S	E	V	A	R	I	K	G	W	D	A	D	D	I	I	V	N	V	Q	G	D	E	P	L	L	P	A	Q	L	V	Q	Q	V	A	K	L	L	V	D	K	P	N	C	S	M	S	T	L	C	E	P	I	H	A	L	D	E	F	Q	R	D	S	I	V	K	V	V	M	S	K	Q	N	E	A	L	Y	F	S	R
Template Known Secondary structure										T			T	T								T	T		T	T																	T	T		S																	T	T	S							S	S	S	B						S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
																														135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.								.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	S	K	P	C	L	M	Q	A	I	Q	R	P	N	V	T	N	M	R	.	.	.	.	.	.	.	Q	A	L	L	M	G	D	H	Y	S	V	E	I	E	N	A	E	I	I	L	D	I	D	T	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	I	P	Y	D	R	D	G	A	K	R	D	E	P	T	L	H	T	Q	A	F	R	H	L	G	L	Y	A	Y	R	V	S	L	L	Q	E	Y	V	T	W	E	M	G	K	L	E	K	L	E	S	L	E	Q	L	R	V	L	E	N	G	H	R	I	A	I	A	V	A	E	A	N	L	P	P	G	V	D	T	Q
Template Known Secondary structure		S			S			S	S	S	S	S	S	S	S					S																				T	T	S										T		T	T						T	T									S	S								S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	F	I	T	A	K	E	R	Y	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	L	D	R	L	N	N	M	P	V	E
Template Known Secondary structure									T	S		G	G
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions