Job Description Q46810 Confidence 99.94% Date Thu Jan 5 12:34:38 GMT 2012 Rank 17 Aligned Residues 189 % Identity 15% Template c3oamD_ PDB info PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae Resolution 1.75 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		M	S	A	I	D	C	I	I	T	A	A	G	L	S	S	R	M	G	Q	W	K	M	M	L	P	W	E	Q	G	T	I	L	D	T	S	I	K	N	A	L	Q	F	C	S	R	I	I	L	V	T	G	Y	R	G	N	E	L	H	E	R	Y	A	N	Q	S	N	I	T	I	I	H	N	P	D	Y	A	Q	.	G	L
Query Conservation																																																																															.
Alig confidence					.																.																																																										.
Template Conservation					.																.
Template Sequence		M	S	F	.	T	V	V	I	P	A	R	Y	Q	S	T	R	L	P	G	.	K	P	L	A	D	I	G	G	K	P	M	I	Q	W	V	Y	E	Q	A	M	Q	A	G	A	D	R	V	I	I	A	T	D	D	E	R	V	E	Q	A	V	Q	A	F	G	G	V	V	C	M	T	S	P	N	H	Q	S	G	T	E	R
Template Known Secondary structure					.								S			S	S	S	T	T	.	G	G	G				T	T														T	T		S							S											T	T								S	S	S			S
Template Predicted Secondary structure					.																.
Template SS confidence
		1	.	.		.	.	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																																							.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	S	V	K	A	A	V	P	A	V	Q	T	E	H	C	F	L	T	H	G	D	M	P	T	L	T	I	D	I	F	R	K	I	W	S	L	.	.	.	R	N	D	G	A	I	L	P	L	H	N	G	I	P	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																							.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	E	V	V	A	K	M	A	I	P	A	D	H	I	V	V	N	V	Q	G	D	E	P	L	I	P	P	A	I	I	R	Q	V	A	D	N	L	A	A	C	S	A	P	M	A	T	L	A	V	E	I	E	D	E	A	E	V	F	N	P	N	A	V	K	V	I	T	D	K	S	G	Y	A	L	Y	F	S	R	A
Template Known Secondary structure									T	T			T	T								T	T		T	T															T	S	S		S															T		T	T	S							T	T	S	B						S	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
																											133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.								.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	L	V	S	K	P	C	L	M	Q	A	I	Q	R	P	N	V	T	N	.	.	.	.	.	.	.	M	R	Q	A	L	L	M	G	D	H	Y	S	V	E	I	E	N	A	E	I	I	L	D	I	D	T	P	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	P	W	D	R	D	N	F	A	K	A	D	K	A	I	V	Q	P	L	L	R	H	I	G	I	Y	A	Y	R	A	G	F	I	N	T	Y	L	D	W	Q	P	S	Q	L	E	K	I	E	C	L	E	Q	L	R	V	L	W	H	G	E	K	I	H	V	A	V	A	L	E	A	P	P	A	G	V	D	T	P	E
Template Known Secondary structure			S	S							T	S	S	S					S																						S										T		T	T						T	T									S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	I	T	A	K	E	R	Y	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	E	V	V	R	R	I	V	A	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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