Job Description P63201 Confidence 100.00% Date Thu Jan 5 12:07:54 GMT 2012 Rank 1 Aligned Residues 225 % Identity 21% Template c3gbgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 Resolution 1.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																											.	.	.	.	.
Query SS confidence																		.	.																											.	.	.	.	.
Query Sequence		C	S	V	I	L	I	R	R	S	F	D	I	Y	H	E	Q	.	.	Q	K	I	S	L	H	N	E	S	I	L	L	L	E	K	N	L	A	D	D	F	A	F	C	S	P	.	.	.	.	.	D	T	R	R	L	D	I	D	E	L	T	V	C	H	Y	L	Q	N	I	R	Q	L	P	R	N	L	G	L	H	S	K
Query Conservation																		.	.																											.	.	.	.	.
Alig confidence																		.	.																											.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.
Template Sequence		K	M	F	W	I	D	S	G	I	A	K	L	I	D	K	N	C	L	V	S	Y	E	I	N	S	S	S	I	I	L	L	K	K	N	S	I	Q	R	F	S	L	T	S	L	S	D	E	N	I	N	V	S	V	I	T	I	S	D	S	F	I	R	S	L	.	.	.	.	.	.	.	.	K	S	Y	I	L	G	N	K
Template Known Secondary structure							S	S	S							T	T	T	T							T	T							T	T												S	S																		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.									.	.	.	.	.	100	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	L	L	I	N	Q	S	P	P	M	P	L	V	T	A	I	F	D	S	F	N	E	S	G	V	N	S	P	I	L	S	N	M	L	Y	L	S	C	L	S	M	F	S	H	K	K	E	L	I	P	L	L	F	N	S	I	S	T	V	S	G	K	V	E	R	L	I	S	F	D	I	A	K	R	W	Y	L	R	D
Query Conservation
Alig confidence																																													.	.
Template Conservation																																													.	.
Template Sequence		D	L	L	L	W	N	C	E	H	N	D	I	A	V	L	S	E	V	V	N	G	F	R	E	I	N	Y	S	D	E	F	L	K	V	F	F	S	G	F	F	S	K	V	.	.	E	K	K	Y	N	S	I	F	I	T	D	D	L	D	A	M	E	K	I	S	C	L	V	K	S	D	I	T	R	N	W	R	W	A	D
Template Known Secondary structure										S	S										T	T	T	S	S																				.	.	T	T	T	S	S	S		S	S			T	T													T	T	T	S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	E	R	M	Y	T	S	E	S	L	I	K	K	K	L	Q	D	E	N	T	C	F	S	K	I	L	L	A	S	R	M	S	M	A	R	R	L	L	E	L	R	Q	I	P	L	H	T	I	A	E	K	C	G	Y	S	S	T	S	Y	F	I	N	T	F	R	Q	Y	Y	G	V	T	P	H	Q	F	A	Q	H	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	C	G	E	L	R	T	N	R	M	I	L	K	K	E	L	E	S	R	G	V	K	F	R	E	L	I	N	S	I	R	I	S	Y	S	I	S	L	M	K	T	G	E	F	K	I	K	Q	I	A	Y	Q	S	G	F	A	S	V	S	Y	F	S	T	V	F	K	S	T	M	N	V	A	P	S	E	Y	L	F	M	L
Template Known Secondary structure							T												T	T	T																						T											T	T		S														S	S									T
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		238	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		271	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions