Job Description P0A6H5 Confidence 98.68% Date Thu Jan 5 11:03:09 GMT 2012 Rank 84 Aligned Residues 149 % Identity 15% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		I	I	G	Q	D	N	A	K	R	S	V	A	I	A	L	R	N	R	W	R	R	M	Q	L	N	E	E	L	R	H	E	V	T	P	K	N	I	L	M	I	G	P	T	G	V	G	K	T	E	I	A	R	R	L	A	K	L	A	N	.	.	A	P	F	I	K	V	E	A	T	K	F	T	E	V	G	Y	V	G	K
Query Conservation																																																													.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.																																.	.															.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Template Sequence		F	V	G	E	H	P	K	I	L	E	I	K	R	L	I	P	.	.	.	.	.	.	.	.	.	.	.	.	K	I	A	K	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	K	G	A	F	V	D	L	N	C	A	S	I	P	Q	E	.	.	.	.	.
Template Known Secondary structure						S												.	.	.	.	.	.	.	.	.	.	.	.				T	S		S								T	T	S	S																S							S	S	S	S		T	T	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.													.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		95	.	.	.	.	100	.	.	.	.																				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	V	D	S	I	I	R	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	A	V	K	M	V	R	V	Q	A	I	E	K	N	R	Y	R	A	E	E	L	A	E	E	R	I	L	D	V	L	I	P	P	A	K	N	N	W	G	Q	T	E	Q	Q	Q	E	P	S	A	A
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	L	A	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	L	T	R	K	K	G	K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	D	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T
Template Known Secondary structure		.	.	.	T										S		S	S	S	S												T	T	T	S						T	G	G	G	S															S					B	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170							.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.
Query Sequence		R	Q	A	F	R	K	K	L	R	E	G	Q	L	D	D	.	.	.	.	.	.	K	E	I	E	I	D	L	A	A	A	P	M	G	V	E
Query Conservation																	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	N	L	E	E	E	I	K	K	G	N	F	R	E	D	L	Y	Y	R	L	S	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K
Template Known Secondary structure		S	S								T	T	S	S									T	S								G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions