Job Description P0A6H5 Confidence 99.96% Date Thu Jan 5 11:03:09 GMT 2012 Rank 12 Aligned Residues 392 % Identity 18% Template c2dhrC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:ftsh; PDBTitle: whole cytosolic region of atp-dependent metalloprotease2 ftsh (g399l) Resolution 3.90 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	I	I	G	Q	D	N	A	K	R	S	V	A	I	A	L	R	N	R	W	R	R	M	Q	L	N	E	E	L	R	H	E	V	T	P	K	N	I	L	M	I	G	P	T	G	V	G	K	T	E	I	A	R	R	L	A	K	L	A	N	A	P	F	I	K	V	E	A	T	K	F	T	E	V	G	Y	V	G	K
Query Conservation
Alig confidence																				.	.																																																								.
Template Conservation																				.	.																																																								.
Template Sequence		K	D	V	A	G	A	E	E	A	K	E	E	L	K	E	I	V	E	.	.	F	L	K	N	P	S	R	F	H	E	M	G	A	R	I	P	K	G	V	L	L	V	G	P	P	G	V	G	K	T	H	L	A	R	A	V	A	G	E	A	R	V	P	F	I	T	A	S	G	S	D	F	V	E	M	.	F	V	G	V
Template Known Secondary structure		T	S	S		S														.	.					G	G	G	T	T	T	T	S					S							S	T	T	S	S												T	T								G	G	G	G	T	S	S	.		T	T
Template Predicted Secondary structure																				.	.																																																								.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.											.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.																																					.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.																																					.	.
Query Sequence		E	V	D	S	I	I	R	D	L	T	D	A	A	V	K	M	V	R	V	Q	A	I	E	K	N	R	Y	R	A	E	.	.	.	.	.	.	.	.	.	.	E	L	A	E	E	R	I	L	D	V	L	I	P	P	A	K	N	N	W	G	Q	T	E	Q	Q	Q	E	P	S	A	A	R	Q	A	F	R	.	.	K	K
Query Conservation																																.	.	.	.	.	.	.	.	.	.																																					.	.
Alig confidence				.																												.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation				.
Template Sequence		G	A	.	A	R	V	R	D	L	F	E	T	A	K	R	H	A	P	C	I	V	F	I	D	E	I	D	A	V	G	R	K	R	G	S	G	V	G	G	G	N	D	E	R	E	Q	T	L	N	Q	L	L	V	E	M	D	G	F	E	K	D	T	A	I	V	V	M	A	A	T	N	R	P	D	I	L	D	P	A	L
Template Known Secondary structure				.								T	T	S	T	T	S	S	S								G	G	G	T				S	S	S	S	T	T	T	S	S														G	G	G			S	S										S		G	G	G	S		T	T	T
Template Predicted Secondary structure				.
Template SS confidence
		233	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		L	R	E	G	Q	L	D	D	K	E	I	E	I	D	L	A	A	A	P	M	G	V	E	I	M	A	P	P	G	M	E	E	M	.	.	T	S	Q	L	Q	S	M	F	Q	N	L	G	G	Q	K	Q	K	A	R	K	L	K	I	K	D	A	M	K	L	L	I	E	E	E	A	A	K	L	V	N	P	E	E	L	K
Query Conservation																																			.	.
Alig confidence									.																										.	.
Template Conservation									.
Template Sequence		L	R	P	G	R	F	D	.	R	Q	I	A	I	D	A	P	D	V	K	G	R	E	Q	I	L	R	I	H	A	R	G	K	P	L	A	E	D	V	D	L	A	L	L	A	K	R	T	P	G	F	V	G	A	D	L	E	N	L	L	N	E	A	A	L	L	A	A	R	E	G	R	R	K	I	T	M	K	D	L	E
Template Known Secondary structure		S	S	T	T	S	S		.																				T	T	S	S	S					S	S	T	T					T	T	S		S																							S	S			S
Template Predicted Secondary structure									.
Template SS confidence
		312	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		241	.	.				.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		Q	D	A	.	.	.	I	D	A	V	E	Q	H	G	I	V	F	I	D	E	I	D	K	I	C	K	R	G	E	S	S	G	P	D	V	S	R	E	G	V	Q	R	D	L	L	P	L	V	E	G	C	T	V	S	T	K	H	G	M	V	K	T	D	H	I	L	F	I	A	S	G	A	F	Q	I	A	K	P	S	D
Query Conservation					.	.	.
Alig confidence					.	.	.																																.	.	.	.	.	.	.	.	.																																		.
Template Conservation																																							.	.	.	.	.	.	.	.	.																																		.
Template Sequence		E	A	A	D	R	V	M	M	L	P	A	K	K	S	L	V	L	S	P	R	D	R	R	I	T	A	Y	H	E	A	G	H	A	L	A	A	H	.	.	.	.	.	.	.	.	.	F	L	E	H	A	D	G	V	H	K	V	T	I	V	P	R	G	R	A	L	G	F	M	M	P	R	R	E	D	M	L	H	W	.
Template Known Secondary structure								T	T		S	S	S	S						T	T																		.	.	.	.	.	.	.	.	.		S	S	S									S			S	S	S	T	T		S	S					T	T					.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.										.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		L	I	P	E	L	Q	G	R	L	P	I	R	V	E	L	Q	A	L	T	T	S	D	F	E	R	I	L	T	E	P	N	A	S	I	T	V	Q	Y	K	A	L	M	A	T	E	G	V	N	I	E	F	T	D	S	G	I	K	R	I	A	E	A	A	W	Q	V	N	E	S	T	E	N	I	G	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.					.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Sequence		S	R	K	R	L	L	D	Q	I	A	V	A	L	A	G	R	A	A	E	E	I	V	F	D	D	V	T	T	G	A	E	N	D	F	R	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	L	A	R	R	M	I	T	E	W	G	M	H	.	.	.	.	.	P	E	F	G	P	V	A	Y	A	V
Template Known Secondary structure																								S		S													.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	S				.	.	.	.	.	S	S	S		S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template SS confidence
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.															.	.	500	.	.	.	.	.	.	.	.	.	510	.						.	.	.	.	.	.	.	.	520	.
																392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	R	L	H	T	V	L	E	R	L	M	E	E	I	S	Y	D	A	S	D	L	S	G	Q	N	I	T	I	D	A	D	Y	V	S	K	H	L	D	A	L	V	A	D	E	D	L	S	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	D	T	Y	L	G	G	Y	D	V	R	Q	Y	S	E	E	T	A	K	R	I	D	E	A	V	R	R	L	I	E	E	Q	Y	Q	R	V	K	A	L	L	L	E	K	R	E	V	L	E	R	V	A	E	T	L	L	E	R	E	T	L	T	A
Template Known Secondary structure						S	S																																						T															S
Template Predicted Secondary structure
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.