Job Description P0A6H5 Confidence 99.87% Date Thu Jan 5 11:03:09 GMT 2012 Rank 16 Aligned Residues 213 % Identity 14% Template c1xwiA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b Resolution 2.80 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		K	H	I	I	G	Q	D	N	A	K	R	S	V	A	I	A	L	R	N	R	W	R	R	M	Q	L	N	E	E	L	R	H	E	V	T	P	K	N	I	L	M	I	G	P	T	G	V	G	K	T	E	I	A	R	R	L	A	K	L	A	.	N	A	P	F	I	K	V	E	A	T	K	F	T	E	V	G	Y	V	G
Query Conservation																																																														.
Alig confidence																															.	.																														.																.
Template Conservation																															.	.																																														.
Template Sequence		S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	.	.	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	N	N	S	T	F	F	S	I	S	S	S	D	L	V	S	K	.	W	L	G
Template Known Secondary structure		G	G	S		S																			G	G	G	S		T	.	.	T					S						S	S	S	S	S													T	T	S										S	S			S	.	S
Template Predicted Secondary structure																															.	.																																														.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.								.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.																						.
Query SS confidence																																			.	.	.	.	.	.	.																						.
Query Sequence		K	E	V	D	S	I	I	R	D	L	T	D	A	A	V	K	M	V	R	V	Q	A	I	E	K	N	R	Y	R	A	E	E	L	.	.	.	.	.	.	.	A	E	E	R	I	L	D	V	L	I	P	P	A	K	N	N	W	G	Q	T	E	.	Q	Q	Q	E	P	S	A	A	R	Q	A	F	R	K	K	L	R	E
Query Conservation																																			.	.	.	.	.	.	.																						.
Alig confidence					.																														.	.	.	.	.	.	.																						.
Template Conservation					.
Template Sequence		E	S	E	.	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	L	C	G	S	R	S	E	N	E	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	V	G	V	D	N	D	G	I	L	V	L	G	A	T	N	I	P	W	V	L	D	S	A	I	R
Template Known Secondary structure		S			.													T	S	S							T	T	T	G	G	G			S	S	S			T	T																S	S	S			T	T								S		T	T	T	S
Template Predicted Secondary structure					.
Template SS confidence
		211	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		G	Q	L	D	D	K	E	I	E	I	D	L	A	A	A	P	M	G	V	E	I	M	A	P	P	G	M	E	E	.	.	.	M	T	S	Q	L	Q	S	M	F	Q	N	L	G	G	Q	K	Q	K	A	R	K	L	K	I	K	D	A	M	K	L	L	I	E	E	E	A	A	K
Query Conservation																															.	.	.
Alig confidence						.																									.	.	.
Template Conservation						.
Template Sequence		R	R	F	E	.	K	R	I	Y	I	P	L	P	E	P	H	A	R	A	A	M	F	K	L	H	L	G	T	T	Q	N	S	L	T	E	A	D	F	R	E	L	G	R	K	T	D	G	Y	S	G	A	D	I	S	I	I	V	R	D	A	L	M	Q	P	V	R	K	V	Q	S
Template Known Secondary structure			T			.																						T	T			B													T		T	T															T
Template Predicted Secondary structure						.
Template SS confidence
		290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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