Job Description P0A6H5 Confidence 99.77% Date Thu Jan 5 11:03:09 GMT 2012 Rank 31 Aligned Residues 210 % Identity 17% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		E	I	V	S	E	L	D	K	H	I	I	G	Q	D	N	A	K	R	S	V	A	I	A	L	R	N	R	W	R	R	M	Q	L	N	E	E	L	R	H	E	V	T	.	.	P	K	N	I	L	M	I	G	P	T	G	V	G	K	T	E	I	A	R	R	L	A	K	L	A	N	A	P	F	I	K	V	E	A	T	K
Query Conservation																																												.	.
Alig confidence																											.	.	.	.	.	.												.	.
Template Conservation																											.	.	.	.	.	.
Template Sequence		D	Y	A	S	Y	I	M	N	G	I	I	K	W	G	D	P	V	T	R	V	L	D	D	G	E	.	.	.	.	.	.	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	N	F	P	F	I	K	I	C	S	P	D
Template Known Secondary structure			T	T	T	T		T	T						S												.	.	.	.	.	.										S	S		S									S	T	T	S	S															S							G	G
Template Predicted Secondary structure																											.	.	.	.	.	.
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.							.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.							.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.																							.
Query SS confidence																																										.	.	.	.	.	.																							.
Query Sequence		F	T	E	V	G	Y	V	G	K	E	V	D	S	I	I	R	D	L	T	D	A	A	V	K	M	V	R	V	Q	A	I	E	K	N	R	Y	R	A	E	E	.	.	.	.	.	.	L	A	E	E	R	I	L	D	V	L	I	P	P	A	K	N	N	W	G	Q	T	E	.	Q	Q	Q	E	P	S	A	A	R	Q	A
Query Conservation																																										.	.	.	.	.	.																							.
Alig confidence				.																																						.	.	.	.	.	.																							.
Template Conservation				.
Template Sequence		K	M	.	I	G	F	S	E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	P	Q	G	R	K	L	L	I	I	G	T	T	S	R	K	D
Template Known Secondary structure		G	S	.	T	T																			T	S	S													T	T		B	T	T	T	T	B													T	T				S	T	T										S
Template Predicted Secondary structure				.
Template SS confidence
		572	.		.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
		159	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		F	R	.	K	K	L	R	E	G	Q	L	D	D	K	E	I	E	I	D	L	A	A	A	P	M	G	V	E	I	M	A	P	P	G	M	E	E	M	T	S	Q	L	Q	S	M	F	Q	N	L	G	G	Q	K	Q	K	A	R	K	L	K	I	K	D	A	M	K	L	L
Query Conservation				.
Alig confidence				.										.
Template Conservation														.
Template Sequence		V	L	Q	E	M	E	M	L	N	A	F	S	.	T	T	I	H	V	P	N	I	A	T	G	E	Q	L	L	E	A	L	E	L	L	G	N	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K	K	V	W	I	G	I	K	K	L	L	M	L	I	E	M	S
Template Known Secondary structure						T	T	G	G	G	T	S	S	.																						T		S													T	T	S
Template Predicted Secondary structure														.
Template SS confidence
		651	.	.	.	.	.	.	.	.	660	.	.		.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions