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Job DescriptionP0A8V0
Confidence99.92%DateThu Jan 5 11:08:47 GMT 2012
Rank15Aligned Residues221
% Identity21%Templatec3zq4C_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCG. . . . . . . . . . . EGTQHQLLHTAFNPGKLDKIFISHLHGDH
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Template Sequence  TAVFALGGLGEIG. . . . . KNTYAVQF. . . . QDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDH
Template Known Secondary structure  SBSSSS.....

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B


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Query Sequence  LFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYR
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Template Sequence  IGGIPYLLR. . . . . . . QVNIPVYGGKLAIGLLRNKLEEHGLLRQTK. . LNIIGEDDIVKFRKTAVSFFRTTH. . . . . . . .
Template Known Secondary structure  TTT.......T




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Query Sequence  IEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGD. . . . . . . TGPCDAALDL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTKM
Template Known Secondary structure  .........................................SSSS
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   223 ......230.........240.........250.........260. ........270.........280.........290.....
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Query Sequence  A. . . . KGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREA. . . GVGKLIITHVSSRYDDKGCQHLLRECRSIFPATE
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Template Sequence  AEIGKEGVLCLLSDSTNSENPEFT. . . . . . MSERRVGESIHDIFRKVDGRIIFATFAS. . NIHRLQQVIEAAVQNGRKVA
Template Known Secondary structure  T

TTTT

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   182.......190.........200..... ....210.........220.........230... ......240.........250...
 
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Query Sequence  L
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Template Sequence  V
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   254
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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