Job Description P0A8V0 Confidence 99.90% Date Thu Jan 5 11:08:47 GMT 2012 Rank 19 Aligned Residues 237 % Identity 22% Template c3af5A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40							.	.	.	.	.	.	.	.	.	50	.	.								.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.													.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.													.	.	.	.	.	.	.
Query Sequence		M	E	L	I	F	L	G	T	S	A	G	V	P	T	R	T	R	N	V	T	A	I	L	L	N	L	Q	H	P	T	Q	S	G	L	W	L	F	D	C	G	.	.	.	.	.	.	E	G	T	Q	H	Q	L	L	H	T	A	F	.	.	.	.	.	.	.	N	P	G	K	L	D	K	I	F	I	S	H	L	H	G
Query Conservation																																										.	.	.	.	.	.													.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.									.	.	.	.											.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.									.	.	.	.
Template Sequence		I	R	I	T	G	L	G	G	F	R	E	V	G	.	.	.	.	.	R	S	A	L	L	V	Q	T	.	.	.	.	D	E	S	F	V	L	V	D	F	G	V	N	V	A	M	L	N	D	P	Y	K	A	F	P	H	F	D	A	P	E	F	Q	Y	V	L	R	E	G	L	L	D	A	I	I	I	T	H	A	H	L
Template Known Secondary structure										S	S	S	S	S	.	.	.	.	.									.	.	.	.	S	S											G	G	G	T	T						S			T	T										T	T								S		S	S
Template Predicted Secondary structure															.	.	.	.	.									.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.						.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.																.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		D	H	L	F	G	L	P	G	L	L	C	S	R	S	M	S	G	I	I	Q	P	L	T	I	Y	G	P	Q	G	I	R	E	F	V	E	T	A	L	R	I	S	G	S	W	T	D	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	I	V	E	I	G	A	G	E	I	L	D	D	G	.	L
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence																			.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																			.	.	.	.	.
Template Sequence		D	H	C	G	M	L	P	Y	L	F	R	Y	N	L	F	D	G	.	.	.	.	.	P	I	Y	T	T	P	P	T	R	D	L	M	V	L	L	Q	K	D	F	I	E	I	Q	Q	S	N	G	Q	D	P	L	Y	R	P	R	D	I	K	E	V	I	K	H	T	I	T	L	D	Y	G	E	V	R	D	I	S	P	D
Template Known Secondary structure					T	T							T	T				S	.	.	.	.	.																										T	T				S	S											T						T	T							T	T
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.						.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	V	T	A	Y	P	L	E	H	P	L	E	C	Y	G	Y	R	I	E	E	H	D	K	P	G	A	L	N	A	Q	A	L	K	A	A	G	V	P	P	G	P	L	F	Q	E	L	K	A	G	K	T	I	T	L	E	D	G	R	Q	I	N	G	A	D	Y	L	A	A	P	V	P	G	K	A	L	A	I	F	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	R	L	T	L	H	N	A	G	H	I	L	G	S	A	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	L	H	I	G	N	G	L	H	N	I	A	I	T	G
Template Known Secondary structure										S	S	S	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.																																																	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		212						.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure			.	.	.	.	.																																																		.	.
Query SS confidence			.	.	.	.	.																																																		.	.
Query Sequence		D	.	.	.	.	.	T	G	P	C	D	A	A	L	D	L	A	K	G	V	D	V	M	V	H	E	A	T	L	D	I	T	M	E	A	K	A	N	S	R	G	H	S	S	T	R	Q	A	A	T	L	A	R	E	A	.	.	G	V	G	K	L	I	I	T	H	V	S	S	R	Y	D	D	K	G	C	Q	H	L	L
Query Conservation			.	.	.	.	.																																																		.	.
Alig confidence			.	.	.	.	.																																				.	.													.	.
Template Conservation																																											.	.
Template Sequence		D	F	K	F	I	P	T	R	L	L	E	P	A	N	A	K	F	P	R	L	E	T	L	V	M	E	S	T	Y	G	G	A	N	D	I	Q	M	P	R	E	E	.	.	A	E	K	R	L	I	E	V	I	H	N	T	I	K	R	G	G	K	V	L	I	P	A	M	A	V	G	R	A	Q	E	V	M	M	V	L	E
Template Known Secondary structure		S				S			S	S							B		S	S		S							T	T		S	T	T									.	.															T	T									T	T	T
Template Predicted Secondary structure																																											.	.
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.			.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	C	R	S	I	F	P	A	T	E	L	A	N	D	F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Y	A	R	I	G	G	I	E	V	P	I	Y	L	D	G	M
Template Known Secondary structure					T	T	T				S						S	S
Template Predicted Secondary structure
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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