Job Description P0A8V0 Confidence 99.91% Date Thu Jan 5 11:08:47 GMT 2012 Rank 18 Aligned Residues 232 % Identity 24% Template c2ycbA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor; PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus Resolution 3.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40									.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.
Query Sequence		M	E	L	I	F	L	G	T	S	A	G	V	P	T	R	T	R	N	V	T	A	I	L	L	N	L	Q	H	P	T	Q	S	G	L	W	L	F	D	C	G	.	.	.	.	.	.	.	.	E	G	T	Q	H	Q	L	L	H	T	A	F	N	P	G	K	L	D	K	I	F	I	S	H	L	H	G	D	H	L	F	G
Query Conservation																																										.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.									.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.									.	.	.	.
Template Sequence		A	R	L	T	A	M	G	G	F	R	E	V	G	.	.	.	.	.	R	S	C	L	Y	L	Q	T	.	.	.	.	P	N	S	R	V	L	L	D	C	G	V	N	V	A	G	G	D	D	K	N	S	Y	P	Y	L	N	V	P	E	F	T	L	D	S	L	D	A	V	I	I	T	H	A	H	L	D	H	S	G	F
Template Known Secondary structure									S	S	S	S	S	S	.	.	.	.	.									.	.	.	.	S	S												S	S							S			T	T	S	T	T			T	T	T							S	S	S	S					T	T
Template Predicted Secondary structure															.	.	.	.	.									.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.						.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		L	P	G	L	L	C	S	R	S	M	S	G	I	I	Q	P	L	T	I	Y	G	P	Q	G	I	R	E	F	V	E	T	A	L	R	I	S	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	T	D	Y	P	L	E	I	V	E	I	G	A	G	E	I	L	D	D	G	.	L	R	K	V	T	A
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence													.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation													.	.	.	.	.	.
Template Sequence		L	P	Y	L	Y	H	Y	G	Y	D	G	.	.	.	.	.	.	P	V	Y	C	T	A	P	T	R	D	L	M	T	L	L	Q	L	D	H	I	D	I	A	H	R	E	D	E	P	L	P	F	N	V	K	H	V	K	K	S	V	K	H	T	I	T	L	D	Y	G	E	V	T	D	I	A	P	D	I	R	L	T	L
Template Known Secondary structure								T	T			S	.	.	.	.	.	.																											T				S												T						T	T							T	T
Template Predicted Secondary structure													.	.	.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.							.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		Y	P	L	E	H	P	L	E	C	Y	G	Y	R	I	E	E	H	D	K	P	G	A	L	N	A	Q	A	L	K	A	A	G	V	P	P	G	P	L	F	Q	E	L	K	A	G	K	T	I	T	L	E	D	G	R	Q	I	N	G	A	D	Y	L	A	A	P	V	P	G	K	A	L	A	I	F	G	D	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	N	A	G	H	I	L	G	S	A	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	L	H	I	G	D	G	Q	H	N	M	V	Y	T	G	D	F	K	Y	E
Template Known Secondary structure						S	S	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	T	T							S			S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.																																																	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
			213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																		.	.
Query SS confidence		.																																																		.	.
Query Sequence		.	T	G	P	C	D	A	A	L	D	L	A	K	G	V	D	V	M	V	H	E	A	T	L	D	I	T	M	E	A	K	A	N	S	R	G	H	S	S	T	R	Q	A	A	T	L	A	R	E	A	.	.	G	V	G	K	L	I	I	T	H	V	S	S	R	Y	D	D	K	G	C	Q	H	L	L	R	E	C	R	S
Query Conservation		.																																																		.	.
Alig confidence		.																																				.	.													.	.								.	.	.	.
Template Conservation																																						.	.																						.	.	.	.
Template Sequence		Q	S	R	L	L	E	A	A	A	N	R	F	P	R	I	E	T	L	V	M	E	S	T	Y	G	G	H	E	D	V	Q	P	S	R	N	R	.	.	A	E	K	E	L	V	K	T	I	Y	S	T	L	R	R	G	G	K	I	L	I	.	.	.	.	P	V	F	A	V	G	R	A	Q	E	L	M	I	V	L	E	E
Template Known Secondary structure				S	S	S								S			S							T	T		S	G	G	G								.	.																T						.	.	.	.				T	T	T
Template Predicted Secondary structure																																						.	.																						.	.	.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.			.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.					.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		290						.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure			.	.	.	.	.
Query SS confidence			.	.	.	.	.
Query Sequence		I	.	.	.	.	.	F	P	A	T	E	L	A	N	D	F	T
Query Conservation			.	.	.	.	.
Alig confidence			.	.	.	.	.
Template Conservation
Template Sequence		Y	I	R	T	G	I	I	D	E	V	P	V	Y	I	D	G	M
Template Known Secondary structure					T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions