Job Description P0A8V0 Confidence 99.91% Date Thu Jan 5 11:08:47 GMT 2012 Rank 17 Aligned Residues 226 % Identity 20% Template c2xr1A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Resolution 2.59 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50								.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.
Query Sequence		M	E	L	I	F	L	G	T	S	A	G	V	P	T	R	T	R	N	V	T	A	I	L	L	N	L	Q	H	P	T	Q	S	G	L	W	L	F	D	C	G	E	G	T	Q	H	Q	L	L	H	T	.	.	.	.	.	.	.	A	F	N	P	G	K	L	D	K	I	F	I	S	H	L	H	G	D	H	L	F	G	L
Query Conservation																																																				.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.									.	.	.	.																					.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.									.	.	.	.
Template Sequence		V	R	V	T	A	L	G	G	C	K	E	V	G	.	.	.	.	.	R	S	C	F	L	L	S	T	.	.	.	.	P	E	S	R	I	L	I	D	C	G	V	N	V	G	S	D	E	N	M	T	P	Y	L	Y	V	P	E	V	F	P	L	N	Q	I	D	A	V	I	V	T	H	A	H	L	D	H	Q	G	L	V
Template Known Secondary structure										S	S	S	S	B	.	.	.	.	.									.	.	.	.	S	S										B		S	S		S	S					T	T	S	T	T	T		S	G	G	G								S	S						T	T
Template Predicted Secondary structure															.	.	.	.	.									.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.						.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.																.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		P	G	L	L	C	S	R	S	M	S	G	I	I	Q	P	L	T	I	Y	G	P	Q	G	I	R	E	F	V	E	T	A	L	R	I	S	G	S	W	T	D	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	I	V	E	I	G	A	G	E	I	L	D	D	G	.	L	R	K	V	T	A	Y
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence												.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation												.	.	.	.	.	.
Template Sequence		P	L	L	F	K	Y	G	Y	E	G	.	.	.	.	.	.	P	V	Y	C	T	P	P	T	R	D	L	M	V	L	L	Q	L	D	Y	I	D	V	A	A	K	E	G	K	K	I	P	Y	E	S	G	M	V	A	K	T	L	K	H	T	I	P	L	D	Y	E	E	V	T	D	I	A	P	D	I	K	L	T	F	H
Template Known Secondary structure							T	T			S	.	.	.	.	.	.																											T					S											T						T	T							T	T
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.							.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		P	L	E	H	P	L	E	C	Y	G	Y	R	I	E	E	H	D	K	P	G	A	L	N	A	Q	A	L	K	A	A	G	V	P	P	G	P	L	F	Q	E	L	K	A	G	K	T	I	T	L	E	D	G	R	Q	I	N	G	A	D	Y	L	A	A	P	V	P	G	K	A	L	A	I	F	G	D	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	G	H	I	L	G	S	A	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	F	H	I	G	D	G	L	H	N	V	V	F	T	G	D	Y	K	Y	E	K
Template Known Secondary structure				S	S	S	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	T								S			S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.																																																	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		T	G	P	C	D	A	A	L	D	L	A	K	G	V	D	V	M	V	H	E	A	T	L	D	I	T	M	E	A	K	A	N	S	R	G	H	S	S	T	R	Q	A	A	T	L	A	R	E	A	G	V	G	K	L	I	I	T	H	V	S	S	R	Y	D	D	K	G	C	Q	H	L	L	R	E	C	R	S	I	.	.
Query Conservation																																																																																.	.
Alig confidence																															.	.	.	.	.	.																.	.					.	.	.	.																			.	.
Template Conservation																															.	.	.	.	.	.																.	.					.	.	.	.
Template Sequence		T	R	L	F	D	P	A	V	N	K	F	P	R	V	E	T	V	I	S	E	A	T	Y	G	N	A	N	A	F	.	.	.	.	.	.	Q	P	A	L	K	D	A	E	K	H	L	Q	M	V	V	.	.	I	A	V	I	.	.	.	.	P	A	F	A	V	G	R	S	Q	E	V	M	I	V	L	E	E	S	I	R
Template Known Secondary structure			S	S							B		S			S							T	T		S	T	T			.	.	.	.	.	.																.	.					.	.	.	.				T	T	T
Template Predicted Secondary structure																															.	.	.	.	.	.																.	.					.	.	.	.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.							.	.	.	390	.	.	.	.	.	.	.	.	.	400	.			.	.	.	.					.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
					291	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	F	P	A	T	E	L	A	N	D	F	T
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		K	G	L	I	P	E	V	P	V	Y	L	D	G	M
Template Known Secondary structure			T	S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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