Job Description P0A8V0 Confidence 99.86% Date Thu Jan 5 11:08:47 GMT 2012 Rank 23 Aligned Residues 225 % Identity 14% Template c2i7xA_ PDB info PDB header:rna binding protein, protein binding Chain: A: PDB Molecule:protein cft2; PDBTitle: structure of yeast cpsf-100 (ydh1p) Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40						.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		M	E	L	I	F	L	G	T	S	A	G	V	P	T	R	T	R	N	V	T	A	I	L	L	N	L	Q	H	P	T	Q	S	G	L	W	L	F	D	C	G	.	.	.	.	.	E	G	T	Q	H	Q	L	L	H	T	A	F	N	P	G	K	L	D	K	I	F	I	S	H	L	H	G	D	H	L	F	G	L	P	G
Query Conservation																																										.	.	.	.	.
Alig confidence																.	.	.	.									.	.	.	.											.	.	.	.	.
Template Conservation																.	.	.	.									.	.	.	.
Template Sequence		M	T	Y	K	Y	N	C	C	D	D	G	S	G	T	.	.	.	.	T	V	G	S	V	V	R	F	.	.	.	.	D	N	V	T	L	L	I	D	P	G	W	N	P	S	K	V	S	Y	E	Q	C	I	K	Y	W	E	K	V	I	P	E	I	D	V	I	I	L	S	Q	P	T	I	E	C	L	G	A	H	S	L
Template Known Secondary structure											S	S	S	S	S	.	.	.	.									.	.	.	.	T	T											T	T	T	S											T	T	G	G	G									S	S					T	T
Template Predicted Secondary structure																.	.	.	.									.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		76	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure				.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	.	.	.	.	C	S	R	S	M	S	G	I	I	Q	P	L	T	I	Y	G	P	Q	G	I	R	E	F	V	E	T	A	L	R	I	S	G	S	W	T	D	Y	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	V	E	I	G	A	G	E	I	L	D	D	G	L	R	K	V
Query Conservation				.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.								.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation															.	.	.	.	.																																																													.	.
Template Sequence		L	Y	Y	N	F	T	S	H	F	I	S	R	I	.	.	.	.	.	Q	V	Y	A	T	L	P	V	I	N	L	G	R	V	S	T	I	D	S	Y	A	S	A	G	V	I	G	P	Y	D	T	N	K	L	D	L	E	D	I	E	I	S	F	D	H	I	V	P	L	K	Y	S	Q	L	V	D	L	R	S	R	.	.
Template Known Secondary structure						S							T		.	.	.	.	.																							T	T	S	S	S	S	B	T	T			S											T	S					T	T						T	T	T	.	.
Template Predicted Secondary structure															.	.	.	.	.																																																													.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	Y	P	L	E	H	P	L	E	C	Y	G	Y	R	I	E	E	H	D	K	P	G	A	L	N	A	Q	A	L	K	A	A	G	V	P	P	G	P	L	F	Q	E	L	K	A	G	K	T	I	T	L	E	D	G	R	Q	I	N	G	A	D	Y	L	A	A	P	V	P	G	K	A	L	A	I	F	G	D	T	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	G	L	T	L	L	A	Y	N	A	G	V	C	P	G	G	S	I	W	C	I	S	T	Y	S	E	K	L	V	Y	A	K	R	W	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T									S	S	S	T	T									S	S							S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																														146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		215	.	.	.	.	220	.	.	.	.	.	.															.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Query Sequence		P	C	D	A	A	L	D	L	A	K	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	M	V	H	E	A	T	L	D	I	T	M	E	A	K	A	N	S	R	G	H	S	S	T	R	Q	A	A	T	L	A	R	E	A	.	.	G	V	G	K	L	I	I	T	H	V	S	S	R	Y	D	D	K
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.													.	.								.	.	.	.
Template Conservation																																														.	.	.	.	.																						.	.	.	.
Template Sequence		H	T	R	D	N	I	L	N	A	A	S	I	L	D	A	T	G	K	P	L	S	T	L	M	R	P	S	A	I	I	T	T	L	D	R	F	G	S	S	Q	P	F	K	K	.	.	.	.	.	R	S	K	I	F	K	D	T	L	K	K	G	L	S	S	D	G	S	V	I	I	.	.	.	.	P	V	D	M	S	G
Template Known Secondary structure		S	S			S	S					T	T	B		T	T	S		B		S	T	T	S	S		S							S					S	S					.	.	.	.	.													T	S	T	T						.	.	.	.				T	T	T
Template Predicted Secondary structure																																														.	.	.	.	.																						.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.					.	.	.	250	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	Q	H	L	L	R	E	C	R	S	I	F	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	F	L	D	L	F	T	Q	V	H	E	L	L	F	E
Template Known Secondary structure															T	T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions