|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | |
|
|
|
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
Query Sequence |   |
M | N | N | I | Q | I | R | N | Y | Q | P | G | D | F | Q | Q | L | C | A | I | F | I | R | A | V | T | M | T | A | S | Q | H | Y | S | P | Q | Q | I | S | A | W | A | Q | I | D | E | S | R | W | K | E | K | L | A | K | S | Q | V | W | V | A | I | I | N | A | Q | P | V | G | F | I | S | R | I | E | H | . |
. |
. |
. |
Query Conservation |   |
|   |   |
|   |
|
|   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |
Alig confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
Template Conservation |   |
  |
| . |
|   |
|
|   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |
| . | . | . |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
F | R | . |
F | C | F | K | Q | X | N | K | S | Q | H | E | L | V | L | G | W | I | H | Q | . |
. |
. |
P | H | I | N | E | W | L | H | G | D | G | L | S | N | T | I | K | D | L | H | E | F | L | N | D | G | K | P | W | A | T | H | W | I | A | Y | D | N | E | I | P | F | A | Y | L | I | T | S | E | I | E | K | S | E |
Template Known Secondary structure |   |
|
| . |  |  |  |  |  |
|
| G | G | G |  |  |  |  |  |  |  | T | T | S | . | . | . |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|
| S | S |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |
| S |
| S |
Template Predicted Secondary structure |   |
 |  | . |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
10 | . | |
. | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | |
|
|
. | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | |
|
|
|
. | . | . | . | . | 110 | . | |
|
|
. | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . |
|
|
|
|  |  |  |
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |
|  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
Y | I | D | M | L | F | V | D | P | E | Y | T | R | R | G | V | A | S | A | L | L | K | P | L | I | K | S | E | . |
. |
. |
. |
S | E | L | T | V | D | A | . |
. |
. |
S | I | T | A | K | P | F | F | E | R | Y | G | F | Q | T | V | K | Q | Q | R | V | E | C | R | G | A | W | F | T | N | F |
Query Conservation |   |
. | . | . | . | . | . | . |   |
|   |   |
|   |
|   |
|   |   |
|
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |
| . | . | . | . |   |   |   |   |   |   |   | . | . | . |   |   |   |
|   |   |
|
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
. | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |
|
|   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
E | Y | P | D | G | A | V | T | L | D | L | F | I | C | R | L | D | Y | I | G | K | G | L | S | V | Q | X | I | H | E | F | I | L | S | Q | F | S | D | T | K | I | V | L | I | N | P | E | I | S | N | E | R | A | V | H | V | Y | K | K | A | G | F | E | I | I | G | E | F | I | A | S | W | H | P | V | P | H | Y | K | X |
Template Known Secondary structure |   |
S |
| T | T |
|  |  |  |  |  |  |  |  |
| S | G | G | G |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
| S |  |  |  |  |
|
| B | T | T |
|  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
86 | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . |
  |
  |   |
143 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
Y | M | R | Y | K |
Query Conservation |   |
  |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
Template Sequence |   |
K | L | C | I | E |
Template Known Secondary structure |   |
 |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
  |   |
166 | . | . | . | 170 |
  |