Job Description P76535 Confidence 96.26% Date Thu Jan 5 12:24:03 GMT 2012 Rank 57 Aligned Residues 150 % Identity 11% Template c3iz6A_ PDB info PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	R	V	L	P	D	I	A	A	A	I	D	V	I	H	A	Q	V	S	G	G	G	R	L	I	Y	L	G	A	G	T	S	G	R	L	G	I	L	D	A	S	E	C	P	P	T	Y	G	V	K	P	G	L	V	V	G	L	I	A	G	G	E	Y	A	I	Q	H	A	V	E	G	A	E	D	S	R	E	G	G
Query Conservation
Alig confidence																		.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	K	T	W	E	K	L	Q	L	A	A	R	V	I	V	.	A	I	E	N	P	Q	D	I	I	V	Q	S	A	R	P	Y	G	Q	R	A	V	L	K	F	A	Q	Y	T	G	A	H	A	I	A	G	R	H	T	P	G	T	F	T	N	Q	L	Q	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																		.		T	T	S	S									S															T						S				T	T	T	T	T	T	T	T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	D	L	K	N	I	N	L	T	A	Q	D	V	V	V	G	I	A	A	S	G	R	T	P	Y	V	I	A	G	L	E	Y	A	R	Q	L	G	C	R	T	V	G	I	S	C	N	P	G	S	A	V	S	T	T	A	E	F	A	I	T	P	I	V	G	A	E	V	V	T	G	S	S	R	M	K	A	G	T	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																		.	.	.	.																							.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																		.	.	.	.																							.	.												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	F	S	E	P	R	L	L	I	L	T	D	P	R	T	D	H	Q	.	.	.	.	P	I	K	E	S	A	L	G	N	I	P	T	I	A	F	C	D	T	D	S	P	M	.	.	R	Y	V	D	I	G	I	P	A	N	N	.	.	.	.	.	.	.	.	.	.	.	K	G	K	Q	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	S	S			S					S		T	T	T	T			.	.	.	.									T									T	T	S		G	.	.	G	G		S					S			.	.	.	.	.	.	.	.	.	.	.	S	S	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																		.	.	.	.																							.	.												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.												170	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	L	V	L	N	M	L	S	T	G	L	M	I	K	S	G	K	V	F	G	N	L	M	V	D	V	V	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	C	L	F	W	L	L	A	R	M	V	L	Q	M	R	G	T	I	L	P	G	H	K	W	D	V	M	V	D
Template Known Secondary structure																T	T	S	S			S									S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions