Job Description P76535 Confidence 96.91% Date Thu Jan 5 12:24:03 GMT 2012 Rank 48 Aligned Residues 148 % Identity 14% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	R	V	L	P	D	I	A	A	A	I	D	V	I	H	A	Q	V	S	G	G	G	R	L	I	Y	L	G	A	G	T	S	G	R	L	G	I	L	D	A	S	E	C	P	P	T	Y	G	V	K	P	G	L	V	V	G	L	I	A	G	G	E	Y	A	I	Q	H	A	V	E	G	A	E	D	S	R	E	G	G
Query Conservation
Alig confidence																			.																																				.	.	.	.	.					.	.	.									.	.	.	.	.	.	.
Template Conservation																			.																																				.	.	.	.	.					.	.	.									.	.	.	.	.	.	.
Template Sequence		L	K	R	T	W	E	K	L	L	L	A	A	R	A	I	V	A	.	I	E	N	P	A	D	V	S	V	I	S	S	R	N	T	G	Q	R	A	V	L	K	F	A	A	A	T	G	A	T	P	I	A	G	R	.	.	.	.	.	F	T	P	G	.	.	.	F	T	N	Q	I	Q	A	A	.	.	.	.	.	.	.
Template Known Secondary structure																			.	S	S		G	G	G							S																					S	S	.	.	.	.	.					.	.	.				T	T		S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																				.	.	.	.	.					.	.	.									.	.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.						.	.	.	.				.	.	.	.	110	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	D	L	K	N	I	N	L	T	A	Q	D	V	V	V	G	I	A	A	S	G	R	T	P	Y	V	I	A	G	L	E	Y	A	R	Q	L	G	C	R	T	V	G	I	S	C	N	P	G	S	A	V	S	T	T	A	E	F	A	I	T	P	I	V	G	A	E	V	V	T	G	S	S	R	M	K	A	G	T	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																	.	.	.	.																								.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																	.	.	.	.																								.	.												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	F	R	E	P	R	L	L	V	V	T	D	P	R	A	D	H	.	.	.	.	Q	P	L	T	E	A	S	Y	V	N	L	P	T	I	A	L	C	N	T	D	S	P	L	.	.	R	Y	V	D	I	A	I	P	C	N	N	.	.	.	.	.	.	.	.	.	.	.	K	G	A	H	S
Template Known Secondary structure		.	.	.	.	.	.	.	.					S					S		T	T	T	T		.	.	.	.										T									T	T				.	.	T	T		S					S		S	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																	.	.	.	.																								.	.												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.												.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	L	V	L	N	M	L	S	T	G	L	M	I	K	S	G	K	V	F	G	N	L	M	V	D	V	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	L	M	W	W	M	L	A	R	E	V	L	R	M	R	G	T	I	S	R	E	H	P	W	E	V	M	P
Template Known Secondary structure																		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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