Job Description P76535 Confidence 96.31% Date Thu Jan 5 12:24:03 GMT 2012 Rank 56 Aligned Residues 151 % Identity 11% Template c2xznB_ PDB info PDB header:ribosome Chain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Resolution 3.93 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	R	V	L	P	D	I	A	A	A	I	D	V	I	H	A	Q	V	S	G	G	G	R	L	I	Y	L	G	A	G	T	S	G	R	L	G	I	L	D	A	S	E	C	P	P	T	Y	G	V	K	P	G	L	V	V	G	L	I	A	G	G	E	Y	A	I	Q	H	A	V	E	G	A	E	D	S	R	E	G	G
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	E	E	T	W	Q	K	I	K	L	A	A	R	V	I	A	A	V	Q	H	P	E	D	V	M	V	V	C	S	R	I	Y	G	Q	R	A	A	I	K	F	A	G	Y	T	H	C	K	S	T	S	S	S	R	W	T	P	G	T	L	T	N	Y	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																				S	S	G	G	G							S															T		B					S	S			T	T	T	T	T		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	D	L	K	N	I	N	L	T	A	Q	D	V	V	V	G	I	A	A	S	G	R	T	P	Y	V	I	A	G	L	E	Y	A	R	Q	L	G	C	R	T	V	G	I	S	C	N	P	G	S	A	V	S	T	T	A	E	F	A	I	T	P	I	V	G	A	E	V	V	T	G	S	S	R	M	K	A	G	T	A
Query Conservation
Alig confidence		.	.	.	.	.	.																			.	.	.	.																								.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																			.	.	.	.																								.	.												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	L	K	Y	E	E	P	R	V	L	I	V	T	D	P	R	S	D	F	.	.	.	.	Q	A	I	K	E	A	S	Y	V	N	I	P	V	I	A	L	C	D	S	D	S	P	L	.	.	A	Y	V	D	V	V	I	P	C	N	N	.	.	.	.	.	.	.	.	.	.	.	R	S	T	E	S
Template Known Secondary structure		.	.	.	.	.	.	S	S					S					S		T	T	T	T		.	.	.	.							T	T	T	T									S	S	S			.	.	T	T							S			.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure		.	.	.	.	.	.																			.	.	.	.																								.	.												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.												.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	L	V	L	N	M	L	S	T	G	L	M	I	K	S	G	K	V	F	G	N	L	M	V	D	V	V	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	M	I	Y	W	M	I	A	R	E	V	K	I	L	R	G	E	L	S	K	D	E	E	W	E	V	M	V	D
Template Known Secondary structure																		T	S	S		S	S	S				S		G	G
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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