Job Description P76535 Confidence 95.12% Date Thu Jan 5 12:24:03 GMT 2012 Rank 61 Aligned Residues 143 % Identity 11% Template c1s1hB_ PDB info PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Resolution 11.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	R	V	L	P	D	I	A	A	A	I	D	V	I	H	A	Q	V	S	G	G	G	R	L	I	Y	L	G	A	G	T	S	G	R	L	G	I	L	D	A	S	E	C	P	P	T	Y	G	V	K	P	G	L	V	V	G	L	I	A	G	G	E	Y	A	I	Q	H	A	V	E	G	A	E	D	S	R	E	G	G
Query Conservation
Alig confidence																			.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	K	T	W	E	K	L	V	L	A	A	R	I	I	A	A	.	I	P	N	P	E	D	V	V	A	I	S	S	R	T	F	G	Q	R	A	V	L	K	F	A	A	H	T	G	A	T	P	I	A	G	R	F	T	P	G	S	F	T	N	Y	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																			.	T	T	T	T									S													T	S	S						S				T	T	T	T	T	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	D	L	K	N	I	N	L	T	A	Q	D	V	V	V	G	I	A	A	S	G	R	T	P	Y	V	I	A	G	L	E	Y	A	R	Q	L	G	C	R	T	V	G	I	S	C	N	P	G	S	A	V	S	T	T	A	E	F	A	I	T	P	I	V	G	A	E	V	V	T	G	S	S	R	M	K	A	G	T	A
Query Conservation
Alig confidence		.	.	.	.	.	.																			.	.	.	.																								.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																			.	.	.	.																								.	.												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	R	S	F	K	E	P	R	L	V	I	V	T	D	P	R	S	D	A	.	.	.	.	Q	A	I	K	E	A	S	Y	V	N	I	P	V	I	A	L	T	D	L	D	S	P	S	.	.	E	F	V	D	V	A	I	P	C	N	N	.	.	.	.	.	.	.	.	.	.	.	R	G	K	H	S
Template Known Secondary structure		.	.	.	.	.	.	S		S				S					S		T	T	T	T		.	.	.	.										T									T	T	S		G	.	.	G	G		S					S		S	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure		.	.	.	.	.	.																			.	.	.	.																								.	.												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.												.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	L	V	L	N	M	L	S	T	G	L	M	I	K	S	G	K	V	F	G	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	L	I	W	Y	L	L	A	R	E	V	L	R	L	R	G	A	L	V	D	R	T
Template Known Secondary structure																		T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions