Job Description P16684 Confidence 100.00% Date Thu Jan 5 11:35:30 GMT 2012 Rank 3 Aligned Residues 224 % Identity 23% Template c3f8mA_ PDB info PDB header:transcription Chain: A: PDB Molecule:gntr-family protein transcriptional regulator; PDBTitle: crystal structure of phnf from mycobacterium smegmatis Resolution 1.80 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		R	Y	Q	E	I	A	A	K	L	E	Q	E	L	.	R	Q	H	Y	R	C	G	D	Y	L	P	A	E	Q	Q	L	A	A	R	F	E	V	N	R	H	T	L	R	R	A	I	D	Q	L	V	E	K	G	W	V	Q	R	R	Q	G	V	G	V	L	V	L	M	R	P	F	D	Y	P	L	N	A	Q	A	R	F	S
Query Conservation															.
Alig confidence															.			.																																																											.	.
Template Conservation																		.																																																											.	.
Template Sequence		L	K	H	Q	V	V	R	A	E	L	D	R	M	L	D	G	.	M	R	I	G	D	P	F	P	A	E	R	E	I	A	E	Q	F	E	V	A	R	E	T	V	R	Q	A	L	R	E	L	L	I	D	G	R	V	E	R	R	G	R	T	T	V	V	A	R	P	K	I	R	Q	P	L	G	M	G	.	.	S	Y	T
Template Known Secondary structure																		.			T	T		B											T	T																T	T	S					T	T													S	S	S	S	.	.
Template Predicted Secondary structure																		.																																																											.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	L	L	D	Q	G	S	H	P	T	S	E	K	L	L	S	V	L	R	P	A	S	G	H	V	A	D	A	L	G	I	T	E	G	E	N	V	I	H	L	R	T	L	R	R	V	N	G	V	A	L	C	L	I	D	H	Y	F	A	D	L	T	L	W	P	T	L	Q	R	F	D	S	G	S	L	H	D	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	A	K	A	Q	G	L	S	A	G	R	I	L	V	A	W	S	D	L	T	A	D	E	V	L	A	G	V	L	G	V	D	V	G	A	P	V	L	Q	L	E	R	V	L	T	T	D	G	V	R	V	G	L	E	T	T	K	L	P	A	Q	R	Y	P	G	L	R	E	T	F	D	H	E	A	S	L	Y	A	E
Template Known Secondary structure						T	T	T																								T			T	T													T	T												G	G	G		T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	Q	T	G	I	A	L	R	R	S	Q	T	R	I	S	A	R	R	A	Q	A	K	E	C	Q	R	L	E	I	P	N	M	S	P	L	L	C	V	R	T	L	N	H	R	D	G	E	S	S	P	A	E	Y	S	V	S	L	T	R	A	D	M	I	E	F	T	M	E
Query Conservation
Alig confidence																																														.
Template Conservation																																														.
Template Sequence		I	R	S	R	G	I	A	F	T	R	T	V	D	T	I	D	T	A	L	P	D	A	R	E	A	A	L	L	G	A	D	A	R	T	P	M	F	L	L	N	R	V	S	Y	.	D	Q	D	D	V	A	I	E	Q	R	R	S	L	Y	R	G	D	R	M	T	F	T	A	V
Template Known Secondary structure					T	T																								T			T	T												.		T	T	S												G	G	G
Template Predicted Secondary structure																																														.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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