Job Description P16684 Confidence 100.00% Date Thu Jan 5 11:35:30 GMT 2012 Rank 5 Aligned Residues 219 % Identity 18% Template c2wv0H_ PDB info PDB header:transcription Chain: H: PDB Molecule:hth-type transcriptional repressor yvoa; PDBTitle: crystal structure of the gntr-hutc family member yvoa from2 bacillus subtilis Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		L	S	T	H	P	T	S	Y	P	T	R	Y	Q	E	I	A	A	K	L	E	Q	E	L	.	R	Q	H	Y	R	C	G	D	Y	L	P	A	E	Q	Q	L	A	A	R	F	E	V	N	R	H	T	L	R	R	A	I	D	Q	L	V	E	K	G	W	V	Q	R	R	Q	G	V	G	V	L	V	L	M	R	P	F	D
Query Conservation																									.
Alig confidence																									.																		.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.
Template Sequence		M	N	I	N	K	Q	S	P	I	P	I	Y	Y	Q	I	M	E	Q	L	K	T	Q	I	K	N	G	E	L	Q	P	D	M	P	L	P	S	E	R	E	Y	A	.	.	.	.	.	.	.	.	E	Q	R	Q	A	L	S	N	L	V	N	E	G	L	L	Y	R	L	T	F	V	S	K	P	K	M	E	Q	A	L	Q
Template Known Secondary structure						T	T	S	S	S																	T	S	S		T	T		B									.	.	.	.	.	.	.	.											T	T	T	S													S	T	T	T	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.									.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	L	N	A	Q	A	R	F	S	Q	N	L	L	D	Q	G	S	H	P	T	S	E	K	L	L	S	V	L	R	P	A	S	G	H	V	A	D	A	L	G	I	T	E	G	E	N	V	I	H	L	R	T	L	R	R	V	N	G	V	A	L	C	L	I	D	H	Y	F	A	D	L	T	L	W	P	T	L	Q	R
Query Conservation
Alig confidence					.	.	.	.																																			.	.	.	.	.	.
Template Conservation					.	.	.	.																																			.	.	.	.	.	.
Template Sequence		G	L	T	.	.	.	.	S	F	T	E	D	M	K	S	R	G	M	T	P	G	S	R	L	I	D	Y	Q	L	I	D	S	T	E	E	L	A	A	I	L	S	.	.	.	.	.	.	I	H	K	I	T	R	V	R	L	A	N	D	I	P	M	A	I	E	S	S	H	I	P	F	E	L	A	G	E	L	N	E	S
Template Known Secondary structure		S			.	.	.	.								T	T	T																									.	.	.	.	.	.											T	T																	S			T	T
Template Predicted Secondary structure					.	.	.	.																																			.	.	.	.	.	.
Template SS confidence
		85	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	S	G	S	L	H	D	F	L	R	E	Q	T	G	I	A	L	R	R	S	Q	T	R	I	S	A	R	R	A	Q	A	K	E	C	Q	R	L	E	I	P	N	M	S	P	L	L	C	V	R	T	L	N	H	R	D	G	E	S	S	P	A	E	Y	S	V	S	L	T	R	A	D	M	I	E	F	T	M	E
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		H	F	Q	S	S	I	Y	D	H	I	E	R	Y	N	S	I	P	I	S	R	A	K	Q	E	L	E	P	S	A	A	T	T	E	E	A	N	I	L	G	I	Q	K	G	A	P	V	L	L	I	K	R	T	T	Y	.	L	Q	N	G	T	A	F	E	H	A	K	S	V	Y	R	G	D	R	Y	T	F	V	H	Y
Template Known Secondary structure		T	T	T	S										T																									T	S		T	T												.		T	T	S												T	T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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