 |
Job Description | P0A9Q9 | Confidence | 98.75% | Date | Thu Jan 5 11:11:02 GMT 2012 |
Rank | 93 | Aligned Residues | 136 |
% Identity | 13% | Template | d1nvmb1 |
SCOP info | NAD(P)-binding Rossmann-fold domains
| NAD(P)-binding Rossmann-fold domains
| Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
|
Resolution | 1.70 |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | |
|
|
|
|
|
. | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | V | G | F | I | G | W | R | G | M | V | G | S | V | L | M | Q | R | M | V | E | E | R | D | F | D | A | I | R | P | V | F | F | S | T | S | Q | L | G | Q | . |
. |
. |
. |
. |
. |
A | A | P | S | F | G | G | T | T | G | T | L | Q | D | A | F | D | L | E | A | L | K | A | L | D | I | I | V | T | C | Q | G | G | D |
Query Conservation |   |
  |
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |
| . | . | . | . | . | . |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
| . |
|   |
|
|   |
|
|
|   |
|
|   |
|   |
| . | . |   |   |
|   |   |   |
|   |
|
|
|   |   |   |
|   |
|
|   |
|
|   |   |
|
|
|   |
|
|   |   |
|
|
|   |
|   |   |   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|   |
Template Sequence |   |
K | V | A | I | I | G | S | . |
G | N | I | G | T | D | L | M | I | K | V | L | R | N | A | . |
. |
K | Y | L | E | M | G | A | M | V | G | I | D | A | A | S | D | G | L | A | R | A | Q | R | M | G | V | T | T | T | Y | A | G | V | E | G | L | I | K | L | P | E | F | A | D | I | D | F | V | F | D | A | T | S | A | S |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| . | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | S | S |  |  |  |  |  |  |  |
| S |
| T | T |
|  |  |  |  |  |  |  |  | T | T |
|
|  |  | S | S |  |  |  |  |  |  |  | S | G | G | G | G | G |  |  |  |  |  |  |
| S |
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | |
. | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | |
|
. | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
  |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . | |
|
. | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | T | N | E | I | Y | P | K | L | R | E | S | . |
. |
G | W | Q | G | Y | W | I | D | A | A | S | S | L | R | M | K | D | D | A | I | I | I | L | D | P | V | N | Q | D | V | I | T | D | G | L | N | N | G | I | R | T | F | V | G | G | N | C | T | V | S | L | M | L | M | S | L | G | G | L | F | A |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   | . | . |
|   |   |   |   |
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |
|
|   |   |   |
|   |
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
| . | . |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|   |   | . | . |   |
|
|
|
|
|
| . | . | . | . |   |
|
|   |   |   |
|
|   |
|
|   |   |   |   |   |   |   | . | . |   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |   |
|
|   |   |   |   |   |
Template Sequence |   |
A | H | V | Q | N | E | A | L | L | R | Q | A | K | P | G | I | R | . |
. |
L | I | D | L | T | P | A | . |
. |
. |
. |
A | I | G | P | Y | C | V | P | V | V | N | L | E | E | H | L | G | K | . |
. |
L | N | V | N | M | V | T | Y | A | G | N | L | D | I | M | T | S | A | A | L | A | T | A | E | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  | . | . |  |  |  |
| S | T | T | . | . | . | . |
| S | S |
| B |
|
|  |  |  |  | T | T | T | T | T | T |
| . | . | S |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  | . | . |  |  |  |  |
|  |  | . | . | . | . |  |
|
|
|  |  |  |  |  |  |
|  |  |  |  |
|
|
| . | . |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
|
100 | . | . | . | . | . | . | |
|
|
|
. | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | |
|
. | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|